ref_feature_select: feature select from reference matrix

In NCBI-Hackathons/clustifyR: Classifier for Single-cell RNA-seq Using Cell Clusters

feature select from reference matrix

Description

feature select from reference matrix

Usage

ref_feature_select(mat, n = 3000, mode = "var", rm.lowvar = TRUE)

Arguments

mat	reference matrix
n	number of genes to return
mode	the method of selecting features
rm.lowvar	whether to remove lower variation genes first

Value

vector of genes

Examples

pbmc_avg <- average_clusters(
    mat = pbmc_matrix_small,
    metadata = pbmc_meta,
    cluster_col = "classified"
)

ref_feature_select(
    mat = pbmc_avg[1:100, ],
    n = 5
)

NCBI-Hackathons/clustifyR documentation built on Aug. 31, 2024, 5:35 a.m.