query_rank_bias: Query rank bias results

In NCBI-Hackathons/clustifyR: Classifier for Single-cell RNA-seq Using Cell Clusters

Query rank bias results

Description

Query rank bias results

Usage

query_rank_bias(bias_list, id_mat, id_ref)

Arguments

bias_list	list of rank diff matrix between cluster and reference cell types
id_mat	name of cluster from average cluster matrix
id_ref	name of cell type in reference matrix

Value

data.frame rank diff values

Examples

avg <- average_clusters(
    mat = pbmc_matrix_small,
    metadata = pbmc_meta,
    cluster_col = "classified",
    if_log = FALSE
)

rankdiff <- find_rank_bias(
    avg,
    cbmc_ref,
    query_genes = pbmc_vargenes
)

qres <- query_rank_bias(
    rankdiff,
    "CD14+ Mono",
    "CD14+ Mono"
)

NCBI-Hackathons/clustifyR documentation built on Aug. 31, 2024, 5:35 a.m.