plot_rank_bias | R Documentation |
Query rank bias results
plot_rank_bias(bias_df, organism = "hsapiens")
bias_df |
data.frame of rank diff matrix between cluster and reference cell types |
organism |
for GO term analysis, organism name: human - 'hsapiens', mouse - 'mmusculus' |
ggplot object of distribution and annotated GO terms
## Not run:
avg <- average_clusters(
mat = pbmc_matrix_small,
metadata = pbmc_meta,
cluster_col = "classified",
if_log = FALSE
)
rankdiff <- find_rank_bias(
avg,
cbmc_ref,
query_genes = pbmc_vargenes
)
qres <- query_rank_bias(
rankdiff,
"CD14+ Mono",
"CD14+ Mono"
)
g <- plot_rank_bias(
qres
)
## End(Not run)
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