HLAClustRView-package: HLAClustRView: HLA typing clustering and visualization based...

In NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq: HLA typing clustering and visualization based on specific similarity metrics

Description

This package implements specialized similarity metrics that quantify the similarity between HLA typing from multiple samples. Using these metrics, the package enables hierarchical cluster analysis and can bind RNA-seq expression (when available) to the clusters.

Author(s)

Pascal Belleau, Adewunmi Adelaja, Astrid Deschenes, Santiago Medina, Nissim Ranade and Allissa Dillman

Maintainer: Pascal Belleau <[e-mail]>

See Also

• readHLADataset for extracting HLA typing information for all samples present in a text file

• calculateHamming for calculating the Hamming distance metric between all samples

• parseHLADbAlignment {for parsing HLA Database alignment files for a specific alignment type}

NCBI-Hackathons/Integrating-HLA-typing-methods-and-RNA-seq documentation built on Nov. 23, 2019, 1:57 a.m.