plotNhoodGraphDA: Plot Milo results on graph of neighbourhood
In MikeDMorgan/miloR: Differential neighbourhood abundance testing on a graph
plotNhoodGraphDA R Documentation
Plot Milo results on graph of neighbourhood
Description
Visualize log-FC estimated with differential nhood abundance testing
on embedding of original single-cell dataset.
Usage
plotNhoodGraphDA(x, milo_res, alpha = 0.05, res_column = "logFC", ...)
Arguments
x
A Milo object
milo_res
a data.frame of milo results
alpha
significance level for Spatial FDR (default: 0.05)
res_column
which column of milo_res object to use for color (default: logFC)
...
arguments to pass to plotNhoodGraph
Value
a ggplot object
Author(s)
Emma Dann
Examples
NULL
MikeDMorgan/miloR documentation built on Oct. 19, 2024, 8:39 p.m.
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| plotNhoodGraphDA | R Documentation |
Plot Milo results on graph of neighbourhood
Description
Visualize log-FC estimated with differential nhood abundance testing on embedding of original single-cell dataset.
Usage
plotNhoodGraphDA(x, milo_res, alpha = 0.05, res_column = "logFC", ...)
Arguments
x |
A |
milo_res |
a data.frame of milo results |
alpha |
significance level for Spatial FDR (default: 0.05) |
res_column |
which column of |
... |
arguments to pass to |
Value
a ggplot object
Author(s)
Emma Dann
Examples
NULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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