qsea-package: QSEA: Quantitative sequencing enrichment analysis and...
In MatthiasLienhard/qsea: IP-seq data analysis and vizualization
qsea-package R Documentation
QSEA: Quantitative sequencing enrichment analysis and visualization
Description
QSEA (quantitative sequencing enrichment analysis) was developed as the
successor of the MEDIPS package for analyzing data derived from
methylated DNA immunoprecipitation (MeDIP) experiments followed by
sequencing (MeDIP-seq).
However, qsea provides functionality for the analysis of
other kinds of quantitative sequencing data
(e.g. ChIP-seq, MBD-seq, CMS-seq and others)
including calculation of differential enrichment between groups of samples.
Author(s)
Matthias Lienhard, Lukas Chavez and Ralf Herwig
Maintainer: Matthias Lienhard <lienhard@molgen.mpg.de>
References
Lienhard M, Grimm C, Morkel M, Herwig R, Chavez L., (Bioinformatics, 2014):
MEDIPS: genome-wide differential coverage analysis of sequencing data derived
from DNA enrichment experiments.
MatthiasLienhard/qsea documentation built on March 22, 2023, 1:15 p.m.
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| qsea-package | R Documentation |
QSEA: Quantitative sequencing enrichment analysis and visualization
Description
QSEA (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides functionality for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.
Author(s)
Matthias Lienhard, Lukas Chavez and Ralf Herwig
Maintainer: Matthias Lienhard <lienhard@molgen.mpg.de>
References
Lienhard M, Grimm C, Morkel M, Herwig R, Chavez L., (Bioinformatics, 2014): MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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