dot-getWorkspaceTable: Obtain the table of datasets from the Terra platform

In LiNk-NY/terraTCGAdata: OpenAccess TCGA Data on Terra as MultiAssayExperiment

Obtain the table of datasets from the Terra platform

Description

The datasets include all TCGA datasets that do not come from the Genomic Data Commons Data Repository because those data use a different data model.

Usage

.getWorkspaceTable(project = "^TCGA", cancerCode = ".*")

Arguments

project	character(1) A prefix for the regex search across all public projects on the terra platform (default: '"^TCGA"'). Usually, this does not change.
cancerCode	character(1) Corresponds to the TCGA cancer code (e.g, "ACC" for AdrenoCortical Carcinoma) of interest. The default value of ('.*') provides all available cancer datasets.

Value

A 'tibble' 'data.frame' that match the project in put; by default, TCGA workspaces.

LiNk-NY/terraTCGAdata documentation built on Nov. 4, 2024, 2:07 p.m.