OneSmapperFlour: Median heatplot generation
In JinmiaoChenLab/oneSENSE: One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)
Description
Usage
Arguments
Value
Examples
View source: R/YKOneSmapperFlour.R
Description
This returns the median heatplot for each category of markers chosen.
If frequency heatplot is selected in the onesense GUI, then both median
and frequency heatplots are generated as PDF files in working directory
Usage
1
2
OneSmapperFlour(LoaderPATH = "fcs_Out", Bins = 250, doCoords = FALSE,
doFreq = FALSE)
Arguments
LoaderPATH
Name of the output file containing fcs files generated
from FCStSNE2.R
Bins
Number of bins to sort cells into corresponding heatplot
doCoords
a boolean that allows for frequency heatplot generation
doFreq
a boolean to allow for the frequency heatplot generation.
TRUE to run, FALSE to not run.
Value
PNG files of combined oneSENSE and heatplot.
Examples
1
2
3
4
webshot::install_phantomjs()
#fcsoutpath <- system.file('extdata/fcs_Out',package='oneSENSE')
#remove hash symbol to run
#OneSmapperFlour(LoaderPATH=fcsoutpath) #remove hash symbol to run
JinmiaoChenLab/oneSENSE documentation built on May 3, 2019, 4:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/YKOneSmapperFlour.R
Description
This returns the median heatplot for each category of markers chosen. If frequency heatplot is selected in the onesense GUI, then both median and frequency heatplots are generated as PDF files in working directory
Usage
1 2 | OneSmapperFlour(LoaderPATH = "fcs_Out", Bins = 250, doCoords = FALSE,
doFreq = FALSE)
|
Arguments
LoaderPATH |
Name of the output file containing fcs files generated from FCStSNE2.R |
Bins |
Number of bins to sort cells into corresponding heatplot |
doCoords |
a boolean that allows for frequency heatplot generation |
doFreq |
a boolean to allow for the frequency heatplot generation. TRUE to run, FALSE to not run. |
Value
PNG files of combined oneSENSE and heatplot.
Examples
1 2 3 4 | webshot::install_phantomjs()
#fcsoutpath <- system.file('extdata/fcs_Out',package='oneSENSE')
#remove hash symbol to run
#OneSmapperFlour(LoaderPATH=fcsoutpath) #remove hash symbol to run
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.