IMR90: IMR90 data, a Human lung fibroblast cell line.
In JasonR055/HarmanData: Data for the Harman package
Description
Usage
Format
Value
References
Examples
Description
Data used in the batch effect correction paper of Johnson, Li
and Rabinovich. The data are from a cell-line experimental designed to reveal
whether exposing mammalian cells to nitric oxide (NO) stabilizes mRNAs. The
data comprises one treatment, one control and 2 time points (0 h and 7.5 h),
resulting in 4 distinct (2 treatment x 2 time points) experimental
conditions. There were 3 batches and a total of 12 samples, with each batch
consisting of 1 replicate from each of the experimental conditions.
Affymetrix HG-U133A Arrays were normalised and background adjusted as a whole
using the RMA procedure in MATLAB.
Usage
1
Format
Two data frames. imr90.data has 22,223 probesets (rows) and 12
samples (columns). While imr90.info is a description of the samples,
with two columns:
Treatmentthe treatment applied to the cells
Batchbatch processing number
Value
promise
References
Johnson et al. Biostatistics (2007).
doi: 10.1093/biostatistics/kxj037
Examples
1
JasonR055/HarmanData documentation built on May 7, 2019, 10:32 a.m.
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Description Usage Format Value References Examples
Description
Data used in the batch effect correction paper of Johnson, Li and Rabinovich. The data are from a cell-line experimental designed to reveal whether exposing mammalian cells to nitric oxide (NO) stabilizes mRNAs. The data comprises one treatment, one control and 2 time points (0 h and 7.5 h), resulting in 4 distinct (2 treatment x 2 time points) experimental conditions. There were 3 batches and a total of 12 samples, with each batch consisting of 1 replicate from each of the experimental conditions. Affymetrix HG-U133A Arrays were normalised and background adjusted as a whole using the RMA procedure in MATLAB.
Usage
1 |
Format
Two data frames. imr90.data has 22,223 probesets (rows) and 12
samples (columns). While imr90.info is a description of the samples,
with two columns:
Treatmentthe treatment applied to the cells
Batchbatch processing number
Value
promise
References
Johnson et al. Biostatistics (2007). doi: 10.1093/biostatistics/kxj037
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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