AromaTransform: The AromaTransform class

In HenrikBengtsson/aroma.core: Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework

The AromaTransform class

Description

Package: aroma.core
Class AromaTransform

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform

Directly known subclasses:

public abstract static class AromaTransform
extends ParametersInterface

This abstract class represents a transform (algorithm/operator) that transforms data. A transform has an input data set, which is transformed into an output data set.

Usage

AromaTransform(dataSet=NULL, tags="*", ..., .reqSetClass="AromaMicroarrayDataSet")

Arguments

dataSet	The input data set as an AromaMicroarrayDataSet.
tags	A character vector of tags to be appended to the tags of the input data set.
...	Not used.
.reqSetClass	Internal argument.

Details

Subclasses must implement the process() method.

Fields and Methods

Methods:

	getFullName	Gets the full name of the output data set.
	getInputDataSet	Gets the input data set.
	getName	Gets the name of the output data set.
	getOutputDataSet	Gets the transformed data set.
	getPath	Gets the path of the output directory.
	getRootPath	Gets the root path of the output directory.
	getTags	Gets the tags of the output data set.
	isDone	Checks if the data set is processed or not.
	process	Processes the data set.
	setTags	-

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson

HenrikBengtsson/aroma.core documentation built on Feb. 20, 2024, 9:17 p.m.