Files in HenrikBengtsson/affxparser
Affymetrix File Parsing SDK

.Rbuildignore

.Rinstignore

.github/workflows/R-CMD-check-valgrind.yaml

.github/workflows/R-CMD-check.yaml

.github/workflows/covr.yaml

.gitignore

.make/Makefile

CONTRIBUTING.md

DESCRIPTION

Makefile

NAMESPACE

NEWS.md R/901.Dictionary.R R/902.CellCoordinatesAndIndices.R R/909.CellIndexMaps.R R/applyCdfBlocks.R R/applyCdfGroupFields.R R/applyCdfGroups.R R/arrangeCelFilesByChipType.R R/cdfAddBaseMmCounts.R R/cdfAddPlasqTypes.R R/cdfAddProbeOffsets.R R/cdfGetFields.R R/cdfGetGroups.R R/cdfGtypeCelToPQ.R R/cdfHeaderToCelHeader.R R/cdfMergeAlleles.R R/cdfMergeStrands.R R/cdfMergeToQuartets.R R/cdfOrderBy.R R/cdfOrderColumnsBy.R R/cdfSetDimension.R R/compareCdfs.R R/compareCels.R R/convertCdf.R R/convertCel.R R/copyCel.R R/createCel.R R/findCdf.R R/findFiles.R R/invertMap.R R/isCelFile.R R/parseDatHeaderString.R R/private.assertMap.R R/private.readCelHeaderV3.R R/private.readCelHeaderV4.R R/private.unwrapCelHeaderV4.R R/private.wrapCelHeaderV4.R R/readBpmap.R R/readBpmapHeader.R R/readBpmapSeqInfo.R R/readCcg.R R/readCcgHeader.R R/readCdf.R R/readCdfCellIndices.R R/readCdfDataFrame.R R/readCdfGroupNames.R R/readCdfHeader.R R/readCdfIsPm.R R/readCdfNbrOfCellsPerUnitGroup.R R/readCdfQc.R R/readCdfUnitNames.R R/readCdfUnits.R R/readCdfUnitsWriteMap.R R/readCel.R R/readCelHeader.R R/readCelIntensities.R R/readCelRectangle.R R/readCelUnits.R R/readChp.R R/readClf.R R/readPgf.R R/testWriteAndReadEmptyCdf.R R/testWriteAndReadEmptyCel.R R/tpmap2bpmap.R R/traverseCcg.R R/updateCel.R R/updateCelUnits.R R/writeCcg.R R/writeCdf.R R/writeCdf.private.R R/writeCdfHeader.R R/writeCdfQcUnits.R R/writeCdfUnits.R R/writeCelHeader.R R/writeTpmap.R R/zzz.R README.md

cleanup

incl/applyCdfGroups.Rex

incl/convertCdf.Rex

incl/convertCel.Rex

incl/createCel.Rex

incl/findCdf.Rex

incl/invertMap.Rex

incl/readCdfDataFrame.Rex

incl/readCdfNbrOfCellsPerUnitGroup.Rex

incl/readCdfUnits.Rex

incl/readCdfUnitsWriteMap.2.Rex

incl/readCdfUnitsWriteMap.Rex

incl/readCel.Rex

incl/readCelRectangle.Rex

incl/readCelUnits.Rex

incl/updateCel.Rex

incl/updateCelUnits.Rex

incl/writeCdf.Rex

inst/WORDLIST

inst/extras/easternEgg.gz

inst/info/Makefile

inst/info/changes2fusion.txt

inst/info/fusion_1.1.0_patches/AffxByteArray.cpp-patch

inst/info/fusion_1.1.0_patches/AffxConv.cpp-patch

inst/info/fusion_1.1.0_patches/AffymetrixBaseTypes.h-patch

inst/info/fusion_1.1.0_patches/CDFFileData.cpp-patch

inst/info/fusion_1.1.0_patches/affy-base-types.h-patch

inst/info/fusion_1.1.0_patches/gcc-4.7.cpp-patch

inst/info/fusion_1.1.2_patches/AffxByteArray.cpp-patch

inst/info/fusion_1.1.2_patches/AffxConv.cpp-patch

inst/info/fusion_1.1.2_patches/AffxConv.cpp-patch2

inst/info/fusion_1.1.2_patches/AffymetrixBaseTypes.h-patch

inst/info/fusion_1.1.2_patches/CDFFileData.cpp-patch

inst/info/fusion_1.1.2_patches/CELFileData.h-patch

inst/info/fusion_1.1.2_patches/CHPMultiDataData.cpp-patch

inst/info/fusion_1.1.2_patches/FileUtils.cpp-patch

inst/info/fusion_1.1.2_patches/Fs.cpp-patch

inst/info/fusion_1.1.2_patches/TsvFile.cpp-patch

inst/info/fusion_1.1.2_patches/Util.cpp-patch

inst/info/fusion_1.1.2_patches/Verbose.cpp-patch

inst/info/fusion_1.1.2_patches/affy-base-types.h-patch

inst/info/fusion_sdk_license.html

inst/testscripts/manualTest.R inst/testscripts/speedtest.R inst/testscripts/writeAndReadEmptyCdf.R inst/testscripts/writeAndReadEmptyCel.R man/1._Dictionary.Rd man/2._Cell_coordinates_and_cell_indices.Rd man/9._Advanced_-_Cell-index_maps_for_reading_and_writing.Rd man/affxparser-package.Rd man/applyCdfGroupFields.Rd man/applyCdfGroups.Rd man/arrangeCelFilesByChipType.Rd man/cdfAddBaseMmCounts.Rd man/cdfAddPlasqTypes.Rd man/cdfAddProbeOffsets.Rd man/cdfGetFields.Rd man/cdfGetGroups.Rd man/cdfGtypeCelToPQ.Rd man/cdfHeaderToCelHeader.Rd man/cdfMergeAlleles.Rd man/cdfMergeStrands.Rd man/cdfMergeToQuartets.Rd man/cdfOrderBy.Rd man/cdfOrderColumnsBy.Rd man/cdfSetDimension.Rd man/compareCdfs.Rd man/compareCels.Rd man/convertCdf.Rd man/convertCel.Rd man/copyCel.Rd man/createCel.Rd man/findCdf.Rd man/findFiles.Rd man/invertMap.Rd man/isCelFile.Rd man/parseDatHeaderString.Rd man/readBpmap.Rd man/readCcg.Rd man/readCcgHeader.Rd man/readCdf.Rd man/readCdfCellIndices.Rd man/readCdfDataFrame.Rd man/readCdfGroupNames.Rd man/readCdfHeader.Rd man/readCdfIsPm.Rd man/readCdfNbrOfCellsPerUnitGroup.Rd man/readCdfQc.Rd man/readCdfUnitNames.Rd man/readCdfUnits.Rd man/readCdfUnitsWriteMap.Rd man/readCel.Rd man/readCelHeader.Rd man/readCelIntensities.Rd man/readCelRectangle.Rd man/readCelUnits.Rd man/readChp.Rd man/readClf.Rd man/readClfEnv.Rd man/readClfHeader.Rd man/readPgf.Rd man/readPgfEnv.Rd man/readPgfHeader.Rd man/updateCel.Rd man/updateCelUnits.Rd man/writeCdf.Rd man/writeCdfHeader.Rd man/writeCdfQcUnits.Rd man/writeCdfUnits.Rd man/writeCelHeader.Rd man/writeTpmap.Rd

src/000.init.c

src/Makevars

src/Makevars.win

src/RAffxErrHandler.h

src/R_affx_bpmap_parser.cpp

src/R_affx_cdf_extras.cpp

src/R_affx_cdf_extras.h

src/R_affx_cdf_parser.cpp

src/R_affx_cel_parser.cpp

src/R_affx_chp_parser.cpp

src/R_affx_clf_pgf_parser.cpp

src/R_affx_constants.h

src/R_affx_test_bpmap_cmdline.cpp

src/R_affx_test_cdfwriter_cmdline.cpp

src/R_affx_test_celwriter_cmdline.cpp

src/R_affx_test_cmd_line.cpp

src/_mingw.h

src/_mingw_gcc1002.h

src/_mingw_gcc1202.h

src/_mingw_gcc463.h

src/_mingw_gcc493.h

src/_mingw_preR42.h

src/fusion/calvin_files/array/src/ArrayAttributes.cpp

src/fusion/calvin_files/array/src/ArrayAttributes.h

src/fusion/calvin_files/array/src/ArrayAudit.cpp

src/fusion/calvin_files/array/src/ArrayAudit.h

src/fusion/calvin_files/array/src/ArrayAuditActionTypes.h

src/fusion/calvin_files/array/src/ArrayData.cpp

src/fusion/calvin_files/array/src/ArrayData.h

src/fusion/calvin_files/array/src/ArrayId.h

src/fusion/calvin_files/array/src/ArrayMedia.cpp

src/fusion/calvin_files/array/src/ArrayMedia.h

src/fusion/calvin_files/array/src/CreateStep.cpp

src/fusion/calvin_files/array/src/CreateStep.h

src/fusion/calvin_files/array/src/PATAssignment.cpp

src/fusion/calvin_files/array/src/PATAssignment.h

src/fusion/calvin_files/data/src/AllelePeaks.h

src/fusion/calvin_files/data/src/CDFData.cpp

src/fusion/calvin_files/data/src/CDFData.h

src/fusion/calvin_files/data/src/CDFDataTypes.h

src/fusion/calvin_files/data/src/CDFProbeGroupInformation.cpp

src/fusion/calvin_files/data/src/CDFProbeGroupInformation.h

src/fusion/calvin_files/data/src/CDFProbeInformation.cpp

src/fusion/calvin_files/data/src/CDFProbeInformation.h

src/fusion/calvin_files/data/src/CDFProbeSetInformation.cpp

src/fusion/calvin_files/data/src/CDFProbeSetInformation.h

src/fusion/calvin_files/data/src/CDFQCProbeInformation.cpp

src/fusion/calvin_files/data/src/CDFQCProbeInformation.h

src/fusion/calvin_files/data/src/CDFQCProbeSetInformation.cpp

src/fusion/calvin_files/data/src/CDFQCProbeSetInformation.h

src/fusion/calvin_files/data/src/CELData.cpp

src/fusion/calvin_files/data/src/CELData.h

src/fusion/calvin_files/data/src/CHPBackgroundZone.cpp

src/fusion/calvin_files/data/src/CHPBackgroundZone.h

src/fusion/calvin_files/data/src/CHPData.cpp

src/fusion/calvin_files/data/src/CHPData.h

src/fusion/calvin_files/data/src/CHPExpressionEntry.cpp

src/fusion/calvin_files/data/src/CHPExpressionEntry.h

src/fusion/calvin_files/data/src/CHPGenotypeEntry.cpp

src/fusion/calvin_files/data/src/CHPGenotypeEntry.h

src/fusion/calvin_files/data/src/CHPMultiDataData.cpp

src/fusion/calvin_files/data/src/CHPMultiDataData.h

src/fusion/calvin_files/data/src/CHPQuantificationData.cpp

src/fusion/calvin_files/data/src/CHPQuantificationData.h

src/fusion/calvin_files/data/src/CHPQuantificationDetectionData.cpp

src/fusion/calvin_files/data/src/CHPQuantificationDetectionData.h

src/fusion/calvin_files/data/src/CHPReseqEntry.h

src/fusion/calvin_files/data/src/CHPTilingData.cpp

src/fusion/calvin_files/data/src/CHPTilingData.h

src/fusion/calvin_files/data/src/CHPTilingEntry.h

src/fusion/calvin_files/data/src/CHPUniversalEntry.cpp

src/fusion/calvin_files/data/src/CHPUniversalEntry.h

src/fusion/calvin_files/data/src/ChromosomeMultiDataSummaryData.h

src/fusion/calvin_files/data/src/ChromosomeSegmentMultiDataData.h

src/fusion/calvin_files/data/src/ColumnInfo.cpp

src/fusion/calvin_files/data/src/ColumnInfo.h

src/fusion/calvin_files/data/src/CytoGenotypeCallMultiDataData.h

src/fusion/calvin_files/data/src/DATData.cpp

src/fusion/calvin_files/data/src/DATData.h

src/fusion/calvin_files/data/src/DataException.cpp

src/fusion/calvin_files/data/src/DataException.h

src/fusion/calvin_files/data/src/DataGroup.cpp

src/fusion/calvin_files/data/src/DataGroup.h

src/fusion/calvin_files/data/src/DataGroupHeader.cpp

src/fusion/calvin_files/data/src/DataGroupHeader.h

src/fusion/calvin_files/data/src/DataSet.cpp

src/fusion/calvin_files/data/src/DataSet.h

src/fusion/calvin_files/data/src/DataSetHeader.cpp

src/fusion/calvin_files/data/src/DataSetHeader.h

src/fusion/calvin_files/data/src/FamilialMultiDataData.h

src/fusion/calvin_files/data/src/FileHeader.cpp

src/fusion/calvin_files/data/src/FileHeader.h

src/fusion/calvin_files/data/src/GenericData.cpp

src/fusion/calvin_files/data/src/GenericData.h

src/fusion/calvin_files/data/src/GenericDataHeader.cpp

src/fusion/calvin_files/data/src/GenericDataHeader.h

src/fusion/calvin_files/data/src/GenericDataTypes.h

src/fusion/calvin_files/data/src/MarkerABSignals.h

src/fusion/calvin_files/data/src/MemMapFile.cpp

src/fusion/calvin_files/data/src/MemMapFile.h

src/fusion/calvin_files/data/src/ProbeSetMultiDataData.cpp

src/fusion/calvin_files/data/src/ProbeSetMultiDataData.h

src/fusion/calvin_files/data/src/ProbeSetQuantificationData.h

src/fusion/calvin_files/data/src/ProbeSetQuantificationDetectionData.h

src/fusion/calvin_files/data/src/TilingResultData.h

src/fusion/calvin_files/exception/src/DevelopmentException.cpp

src/fusion/calvin_files/exception/src/DevelopmentException.h

src/fusion/calvin_files/exception/src/ExceptionBase.cpp

src/fusion/calvin_files/exception/src/ExceptionBase.h

src/fusion/calvin_files/exception/src/InterpretationException.cpp

src/fusion/calvin_files/exception/src/InterpretationException.h

src/fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp

src/fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h

src/fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp

src/fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h

src/fusion/calvin_files/fusion/src/FusionArrayFileReader.cpp

src/fusion/calvin_files/fusion/src/FusionArrayFileReader.h

src/fusion/calvin_files/fusion/src/FusionBARData.cpp

src/fusion/calvin_files/fusion/src/FusionBARData.h

src/fusion/calvin_files/fusion/src/FusionBEDData.cpp

src/fusion/calvin_files/fusion/src/FusionBEDData.h

src/fusion/calvin_files/fusion/src/FusionBPMAPData.cpp

src/fusion/calvin_files/fusion/src/FusionBPMAPData.h

src/fusion/calvin_files/fusion/src/FusionCDFData.cpp

src/fusion/calvin_files/fusion/src/FusionCDFData.h

src/fusion/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp

src/fusion/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h

src/fusion/calvin_files/fusion/src/FusionCELData.cpp

src/fusion/calvin_files/fusion/src/FusionCELData.h

src/fusion/calvin_files/fusion/src/FusionCELDataAdapterInterface.h

src/fusion/calvin_files/fusion/src/FusionCHPData.cpp

src/fusion/calvin_files/fusion/src/FusionCHPData.h

src/fusion/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h

src/fusion/calvin_files/fusion/src/FusionCHPGenericData.cpp

src/fusion/calvin_files/fusion/src/FusionCHPGenericData.h

src/fusion/calvin_files/fusion/src/FusionCHPLegacyData.cpp

src/fusion/calvin_files/fusion/src/FusionCHPLegacyData.h

src/fusion/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp

src/fusion/calvin_files/fusion/src/FusionCHPMultiDataAccessor.h

src/fusion/calvin_files/fusion/src/FusionCHPMultiDataData.cpp

src/fusion/calvin_files/fusion/src/FusionCHPMultiDataData.h

src/fusion/calvin_files/fusion/src/FusionCHPQuantificationData.cpp

src/fusion/calvin_files/fusion/src/FusionCHPQuantificationData.h

src/fusion/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp

src/fusion/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.h

src/fusion/calvin_files/fusion/src/FusionCHPTilingData.cpp

src/fusion/calvin_files/fusion/src/FusionCHPTilingData.h

src/fusion/calvin_files/fusion/src/FusionCoords.h

src/fusion/calvin_files/fusion/src/FusionGRDData.cpp

src/fusion/calvin_files/fusion/src/FusionGRDData.h

src/fusion/calvin_files/fusion/src/FusionGrcFileReader.cpp

src/fusion/calvin_files/fusion/src/FusionGrcFileReader.h

src/fusion/calvin_files/fusion/src/FusionMSKData.cpp

src/fusion/calvin_files/fusion/src/FusionMSKData.h

src/fusion/calvin_files/fusion/src/FusionPSIData.cpp

src/fusion/calvin_files/fusion/src/FusionPSIData.h

src/fusion/calvin_files/fusion/src/FusionProbeSetResults.cpp

src/fusion/calvin_files/fusion/src/FusionProbeSetResults.h

src/fusion/calvin_files/fusion/src/FusionSMDData.cpp

src/fusion/calvin_files/fusion/src/FusionSMDData.h

src/fusion/calvin_files/fusion/src/FusionTagValuePairType.h

src/fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp

src/fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h

src/fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp

src/fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h

src/fusion/calvin_files/fusion/src/fusionexception.h

src/fusion/calvin_files/parameter/src/AffymetrixParameterConsts.h

src/fusion/calvin_files/parameter/src/CELAlgorithmParameterNames.h

src/fusion/calvin_files/parameter/src/Parameter.h

src/fusion/calvin_files/parameter/src/ParameterException.cpp

src/fusion/calvin_files/parameter/src/ParameterException.h

src/fusion/calvin_files/parameter/src/ParameterFileData.cpp

src/fusion/calvin_files/parameter/src/ParameterFileData.h

src/fusion/calvin_files/parameter/src/ParameterNameValueType.cpp

src/fusion/calvin_files/parameter/src/ParameterNameValueType.h

src/fusion/calvin_files/parsers/src/ArrayFileReader.cpp

src/fusion/calvin_files/parsers/src/ArrayFileReader.h

src/fusion/calvin_files/parsers/src/AuditFileConstants.h

src/fusion/calvin_files/parsers/src/AuditFileReader.cpp

src/fusion/calvin_files/parsers/src/AuditFileReader.h

src/fusion/calvin_files/parsers/src/CDFFileReader.cpp

src/fusion/calvin_files/parsers/src/CDFFileReader.h

src/fusion/calvin_files/parsers/src/CHPFileReader.cpp

src/fusion/calvin_files/parsers/src/CHPFileReader.h

src/fusion/calvin_files/parsers/src/CHPMultiDataFileReader.cpp

src/fusion/calvin_files/parsers/src/CHPMultiDataFileReader.h

src/fusion/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp

src/fusion/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.h

src/fusion/calvin_files/parsers/src/CHPQuantificationFileReader.cpp

src/fusion/calvin_files/parsers/src/CHPQuantificationFileReader.h

src/fusion/calvin_files/parsers/src/CHPTilingFileReader.cpp

src/fusion/calvin_files/parsers/src/CHPTilingFileReader.h

src/fusion/calvin_files/parsers/src/CelFileReader.cpp

src/fusion/calvin_files/parsers/src/CelFileReader.h

src/fusion/calvin_files/parsers/src/DATFileReader.cpp

src/fusion/calvin_files/parsers/src/DATFileReader.h

src/fusion/calvin_files/parsers/src/DataGroupHeaderReader.cpp

src/fusion/calvin_files/parsers/src/DataGroupHeaderReader.h

src/fusion/calvin_files/parsers/src/DataGroupReader.cpp

src/fusion/calvin_files/parsers/src/DataGroupReader.h

src/fusion/calvin_files/parsers/src/DataSetHeaderReader.cpp

src/fusion/calvin_files/parsers/src/DataSetHeaderReader.h

src/fusion/calvin_files/parsers/src/DataSetReader.cpp

src/fusion/calvin_files/parsers/src/DataSetReader.h

src/fusion/calvin_files/parsers/src/FileException.cpp

src/fusion/calvin_files/parsers/src/FileException.h

src/fusion/calvin_files/parsers/src/FileHeaderReader.cpp

src/fusion/calvin_files/parsers/src/FileHeaderReader.h

src/fusion/calvin_files/parsers/src/FileInput.cpp

src/fusion/calvin_files/parsers/src/FileInput.h

src/fusion/calvin_files/parsers/src/GenericDataHeaderReader.cpp

src/fusion/calvin_files/parsers/src/GenericDataHeaderReader.h

src/fusion/calvin_files/parsers/src/GenericFileReader.cpp

src/fusion/calvin_files/parsers/src/GenericFileReader.h

src/fusion/calvin_files/parsers/src/GridControlFileReader.cpp

src/fusion/calvin_files/parsers/src/GridControlFileReader.h

src/fusion/calvin_files/parsers/src/ParameterFileReader.cpp

src/fusion/calvin_files/parsers/src/ParameterFileReader.h

src/fusion/calvin_files/parsers/src/SAXArrayHandlers.cpp

src/fusion/calvin_files/parsers/src/SAXArrayHandlers.h

src/fusion/calvin_files/parsers/src/SAXParameterFileHandlers.cpp

src/fusion/calvin_files/parsers/src/SAXParameterFileHandlers.h

src/fusion/calvin_files/parsers/src/SAXTemplateHandlers.cpp

src/fusion/calvin_files/parsers/src/SAXTemplateHandlers.h

src/fusion/calvin_files/parsers/src/TemplateFileReader.cpp

src/fusion/calvin_files/parsers/src/TemplateFileReader.h

src/fusion/calvin_files/parsers/src/TextFileReader.cpp

src/fusion/calvin_files/parsers/src/TextFileReader.h

src/fusion/calvin_files/portability/src/AffymetrixBaseTypes.h

src/fusion/calvin_files/template/src/TemplateData.cpp

src/fusion/calvin_files/template/src/TemplateData.h

src/fusion/calvin_files/template/src/TemplateId.h

src/fusion/calvin_files/utils/src/AffyStlCollectionTypes.h

src/fusion/calvin_files/utils/src/AffymetrixGuid.cpp

src/fusion/calvin_files/utils/src/AffymetrixGuid.h

src/fusion/calvin_files/utils/src/Calvin.cpp

src/fusion/calvin_files/utils/src/Calvin.h

src/fusion/calvin_files/utils/src/Coords.h

src/fusion/calvin_files/utils/src/DateTime.cpp

src/fusion/calvin_files/utils/src/DateTime.h

src/fusion/calvin_files/utils/src/FileUtils.cpp

src/fusion/calvin_files/utils/src/FileUtils.h

src/fusion/calvin_files/utils/src/GenoCallCoder.cpp

src/fusion/calvin_files/utils/src/GenoCallCoder.h

src/fusion/calvin_files/utils/src/StringUtils.cpp

src/fusion/calvin_files/utils/src/StringUtils.h

src/fusion/calvin_files/utils/src/Subgrids.h

src/fusion/calvin_files/utils/src/checksum.cpp

src/fusion/calvin_files/utils/src/checksum.h

src/fusion/calvin_files/writers/src/ArrayFileWriter.cpp

src/fusion/calvin_files/writers/src/ArrayFileWriter.h

src/fusion/calvin_files/writers/src/AuditFileWriter.cpp

src/fusion/calvin_files/writers/src/AuditFileWriter.h

src/fusion/calvin_files/writers/src/CDFCntrlFileWriter.cpp

src/fusion/calvin_files/writers/src/CDFCntrlFileWriter.h

src/fusion/calvin_files/writers/src/CDFCntrlProbeSetWriter.cpp

src/fusion/calvin_files/writers/src/CDFCntrlProbeSetWriter.h

src/fusion/calvin_files/writers/src/CDFFileWriter.cpp

src/fusion/calvin_files/writers/src/CDFFileWriter.h

src/fusion/calvin_files/writers/src/CDFProbeSetWriter.cpp

src/fusion/calvin_files/writers/src/CDFProbeSetWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPFileBufferWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPFileBufferWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPFileUpdater.cpp

src/fusion/calvin_files/writers/src/CalvinCHPFileUpdater.h

src/fusion/calvin_files/writers/src/CalvinCHPFileWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPFileWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPMultiDataFileBufferWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPMultiDataFileBufferWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPMultiDataFileUpdater.cpp

src/fusion/calvin_files/writers/src/CalvinCHPMultiDataFileUpdater.h

src/fusion/calvin_files/writers/src/CalvinCHPMultiDataFileWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPMultiDataFileWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileBufferWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileBufferWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileUpdater.cpp

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileUpdater.h

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationFileBufferWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationFileBufferWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationFileUpdater.cpp

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationFileUpdater.h

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationFileWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPQuantificationFileWriter.h

src/fusion/calvin_files/writers/src/CalvinCHPTilingFileWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCHPTilingFileWriter.h

src/fusion/calvin_files/writers/src/CalvinCelFileWriter.cpp

src/fusion/calvin_files/writers/src/CalvinCelFileWriter.h

src/fusion/calvin_files/writers/src/CombinedDatConstants.h

src/fusion/calvin_files/writers/src/CopyNumberResultWriter.cpp

src/fusion/calvin_files/writers/src/CopyNumberResultWriter.h

src/fusion/calvin_files/writers/src/DATFileUpdater.cpp

src/fusion/calvin_files/writers/src/DATFileUpdater.h

src/fusion/calvin_files/writers/src/DATFileWriter.cpp

src/fusion/calvin_files/writers/src/DATFileWriter.h

src/fusion/calvin_files/writers/src/DataGroupHeaderUpdater.cpp

src/fusion/calvin_files/writers/src/DataGroupHeaderUpdater.h

src/fusion/calvin_files/writers/src/DataGroupHeaderWriter.cpp

src/fusion/calvin_files/writers/src/DataGroupHeaderWriter.h

src/fusion/calvin_files/writers/src/DataGroupWriter.cpp

src/fusion/calvin_files/writers/src/DataGroupWriter.h

src/fusion/calvin_files/writers/src/DataSetHeaderAppend.cpp

src/fusion/calvin_files/writers/src/DataSetHeaderAppend.h

src/fusion/calvin_files/writers/src/DataSetHeaderUpdater.cpp

src/fusion/calvin_files/writers/src/DataSetHeaderUpdater.h

src/fusion/calvin_files/writers/src/DataSetHeaderWriter.cpp

src/fusion/calvin_files/writers/src/DataSetHeaderWriter.h

src/fusion/calvin_files/writers/src/DataSetUpdater.cpp

src/fusion/calvin_files/writers/src/DataSetUpdater.h

src/fusion/calvin_files/writers/src/DataSetWriter.cpp

src/fusion/calvin_files/writers/src/DataSetWriter.h

src/fusion/calvin_files/writers/src/FileHeaderUpdater.cpp

src/fusion/calvin_files/writers/src/FileHeaderUpdater.h

src/fusion/calvin_files/writers/src/FileHeaderWriter.cpp

src/fusion/calvin_files/writers/src/FileHeaderWriter.h

src/fusion/calvin_files/writers/src/FileOutput.cpp

src/fusion/calvin_files/writers/src/FileOutput.h

src/fusion/calvin_files/writers/src/FileWriteException.cpp

src/fusion/calvin_files/writers/src/FileWriteException.h

src/fusion/calvin_files/writers/src/GenericDataHeaderUpdater.cpp

src/fusion/calvin_files/writers/src/GenericDataHeaderUpdater.h

src/fusion/calvin_files/writers/src/GenericDataHeaderWriter.cpp

src/fusion/calvin_files/writers/src/GenericDataHeaderWriter.h

src/fusion/calvin_files/writers/src/GenericFileUpdater.cpp

src/fusion/calvin_files/writers/src/GenericFileUpdater.h

src/fusion/calvin_files/writers/src/GenericFileWriter.cpp

src/fusion/calvin_files/writers/src/GenericFileWriter.h

src/fusion/calvin_files/writers/src/GridControlFileWriter.cpp

src/fusion/calvin_files/writers/src/GridControlFileWriter.h

src/fusion/calvin_files/writers/src/MMDATFileWriter.cpp

src/fusion/calvin_files/writers/src/MMDATFileWriter.h

src/fusion/calvin_files/writers/src/MMDataSetDataWriter.cpp

src/fusion/calvin_files/writers/src/MMDataSetDataWriter.h

src/fusion/calvin_files/writers/src/MultiChannelCelFileCollater.cpp

src/fusion/calvin_files/writers/src/MultiChannelCelFileCollater.h

src/fusion/calvin_files/writers/src/TemplateFileWriter.cpp

src/fusion/calvin_files/writers/src/TemplateFileWriter.h

src/fusion/calvin_files/writers/src/TextFileWriter.cpp

src/fusion/calvin_files/writers/src/TextFileWriter.h

src/fusion/file/1LQFileData.cpp

src/fusion/file/1LQFileData.h

src/fusion/file/BARFileData.cpp

src/fusion/file/BARFileData.h

src/fusion/file/BARFileWriter.cpp

src/fusion/file/BARFileWriter.h

src/fusion/file/BEDFileData.cpp

src/fusion/file/BEDFileData.h

src/fusion/file/BEDFileWriter.cpp

src/fusion/file/BEDFileWriter.h

src/fusion/file/BPMAPFileData.cpp

src/fusion/file/BPMAPFileData.h

src/fusion/file/BPMAPFileWriter.cpp

src/fusion/file/BPMAPFileWriter.h

src/fusion/file/CDFFileData.cpp

src/fusion/file/CDFFileData.h

src/fusion/file/CELFileData.cpp

src/fusion/file/CELFileData.h

src/fusion/file/CELFileWriter.cpp

src/fusion/file/CELFileWriter.h

src/fusion/file/CHPFileBufferWriter.cpp

src/fusion/file/CHPFileBufferWriter.h

src/fusion/file/CHPFileData.cpp

src/fusion/file/CHPFileData.h

src/fusion/file/CHPFileUpdater.cpp

src/fusion/file/CHPFileUpdater.h

src/fusion/file/CHPFileWriter.cpp

src/fusion/file/CHPFileWriter.h

src/fusion/file/CMSFileData.cpp

src/fusion/file/CMSFileData.h

src/fusion/file/DATFileData.cpp

src/fusion/file/DATFileData.h

src/fusion/file/DttArrayFileReader.cpp

src/fusion/file/DttArrayFileReader.h

src/fusion/file/EXPFileData.cpp

src/fusion/file/EXPFileData.h

src/fusion/file/FileIO.cpp

src/fusion/file/FileIO.h

src/fusion/file/FileWriter.cpp

src/fusion/file/FileWriter.h

src/fusion/file/GQCFileData.cpp

src/fusion/file/GQCFileData.h

src/fusion/file/GRCFileData.cpp

src/fusion/file/GRCFileData.h

src/fusion/file/GRCFileWriter.cpp

src/fusion/file/GRCFileWriter.h

src/fusion/file/GRDFileData.cpp

src/fusion/file/GRDFileData.h

src/fusion/file/GRDFileWriter.cpp

src/fusion/file/GRDFileWriter.h

src/fusion/file/GridControlData.h

src/fusion/file/GridCoordinates.h

src/fusion/file/IniFile.cpp

src/fusion/file/IniFile.h

src/fusion/file/IntervalEntry.h

src/fusion/file/MDLFileData.cpp

src/fusion/file/MDLFileData.h

src/fusion/file/MSKFileData.cpp

src/fusion/file/MSKFileData.h

src/fusion/file/MSKFileWriter.cpp

src/fusion/file/MSKFileWriter.h

src/fusion/file/PSIFileData.cpp

src/fusion/file/PSIFileData.h

src/fusion/file/SAXDttArrayHandlers.cpp

src/fusion/file/SAXDttArrayHandlers.h

src/fusion/file/SMDFileData.cpp

src/fusion/file/SMDFileData.h

src/fusion/file/SimpleBinaryFile.cpp

src/fusion/file/SimpleBinaryFile.h

src/fusion/file/TagValuePair.h

src/fusion/file/TsvFile/BgpFile.cpp

src/fusion/file/TsvFile/BgpFile.h

src/fusion/file/TsvFile/ClfFile.cpp

src/fusion/file/TsvFile/ClfFile.h

src/fusion/file/TsvFile/DumpPgf.cpp

src/fusion/file/TsvFile/DumpPgf.h

src/fusion/file/TsvFile/PgfFile.cpp

src/fusion/file/TsvFile/PgfFile.h

src/fusion/file/TsvFile/SequentialClfFile.cpp

src/fusion/file/TsvFile/SequentialClfFile.h

src/fusion/file/TsvFile/SnpTable.cpp

src/fusion/file/TsvFile/SnpTable.h

src/fusion/file/TsvFile/SpfFile.cpp

src/fusion/file/TsvFile/SpfFile.h

src/fusion/file/TsvFile/TsvFile.cpp

src/fusion/file/TsvFile/TsvFile.h

src/fusion/file/TsvFile/TsvFileDiff.cpp

src/fusion/file/TsvFile/TsvFileDiff.h

src/fusion/file/TsvFile/TsvJoin.cpp

src/fusion/file/TsvFile/TsvJoin.h

src/fusion/file/TsvFile/apt-dump-pgf.cpp

src/fusion/file/TsvFile/apt-tsv-join.cpp

src/fusion/file/TsvFile/tsv-example.cpp

src/fusion/file/TsvFile/tsv-test.cpp

src/fusion/file/TsvFile/tsv-util.cpp

src/fusion/file/test-fileio.cpp

src/fusion/portability/affy-base-types.h

src/fusion/portability/affy-system-api.h

src/fusion/portability/apt-no-warnings.h

src/fusion/portability/apt-win-dll.h

src/fusion/util/AffxArray.h

src/fusion/util/AffxBinaryFile.cpp

src/fusion/util/AffxBinaryFile.h

src/fusion/util/AffxByteArray.cpp

src/fusion/util/AffxByteArray.h

src/fusion/util/AffxConv.cpp

src/fusion/util/AffxConv.h

src/fusion/util/AffxMultiDimensionalArray.h

src/fusion/util/AffxSTL.h

src/fusion/util/AffxSplitArray.h

src/fusion/util/AffxStatistics.cpp

src/fusion/util/AffxStatistics.h

src/fusion/util/AffxString.cpp

src/fusion/util/AffxString.h

src/fusion/util/AffxTime.cpp

src/fusion/util/AffxTime.h

src/fusion/util/AptErrno.h

src/fusion/util/AptVersionInfo.h

src/fusion/util/BaseEngine.cpp

src/fusion/util/BaseEngine.h

src/fusion/util/CalvinChpCheck.h

src/fusion/util/CalvinToText.cpp

src/fusion/util/CalvinToText.h

src/fusion/util/CelCheck.h

src/fusion/util/ChpCheck.h

src/fusion/util/Convert.cpp

src/fusion/util/Convert.h

src/fusion/util/DotProgress.cpp

src/fusion/util/DotProgress.h

src/fusion/util/Engines.h

src/fusion/util/Err.cpp

src/fusion/util/Err.h

src/fusion/util/ErrHandler.h

src/fusion/util/Except.h

src/fusion/util/FrugalVector.h

src/fusion/util/Fs.cpp

src/fusion/util/Fs.h

src/fusion/util/FsPath.cpp

src/fusion/util/FsPath.h

src/fusion/util/Guid.cpp

src/fusion/util/Guid.h

src/fusion/util/LineFile.cpp

src/fusion/util/LineFile.h

src/fusion/util/LogStream.cpp

src/fusion/util/LogStream.h

src/fusion/util/MatrixCheck.h

src/fusion/util/MessageStream.h

src/fusion/util/MixedFileCheck.h

src/fusion/util/MsgHandler.h

src/fusion/util/MsgSocketHandler.cpp

src/fusion/util/MsgSocketHandler.h

src/fusion/util/MsgStream.cpp

src/fusion/util/MsgStream.h

src/fusion/util/Options.cpp

src/fusion/util/Options.h

src/fusion/util/OutputMessageStream.cpp

src/fusion/util/OutputMessageStream.h

src/fusion/util/PgOptions.cpp

src/fusion/util/PgOptions.h

src/fusion/util/Progress.h

src/fusion/util/ProgressDot.h

src/fusion/util/ProgressHandler.h

src/fusion/util/RowFile.cpp

src/fusion/util/RowFile.h

src/fusion/util/SQLite.cpp

src/fusion/util/SQLite.h

src/fusion/util/SocketBase.cpp

src/fusion/util/SocketBase.h

src/fusion/util/SocketClient.cpp

src/fusion/util/SocketClient.h

src/fusion/util/SocketEngine.cpp

src/fusion/util/SocketEngine.h

src/fusion/util/SocketHandler.cpp

src/fusion/util/SocketHandler.h

src/fusion/util/SocketServer.cpp

src/fusion/util/SocketServer.h

src/fusion/util/SocketTextHandler.cpp

src/fusion/util/SocketTextHandler.h

src/fusion/util/SocketUtil.cpp

src/fusion/util/SocketUtil.h

src/fusion/util/TableFile.cpp

src/fusion/util/TableFile.h

src/fusion/util/TextFileCheck.h

src/fusion/util/TmpFileFactory.cpp

src/fusion/util/TmpFileFactory.h

src/fusion/util/Util.cpp

src/fusion/util/Util.h

src/fusion/util/Verbose.cpp

src/fusion/util/Verbose.h

src/fusion/util/VerboseErrHandler.h

src/fusion/util/apt-check-calvinchp.cpp

src/fusion/util/apt-check-cel.cpp

src/fusion/util/apt-check-chp.cpp

src/fusion/util/apt-check-matrix.cpp

src/fusion/util/apt-check-mixedfile.cpp

src/fusion/util/apt-check-textfile.cpp

src/fusion/util/apt-engine-wrapper.cpp

src/fusion/util/apt-engine-wrapper.vcproj

src/fusion/util/chksum.cpp

src/fusion/util/chksum.h

src/fusion/util/dump-guid.cpp

src/fusion/util/md5.cpp

src/fusion/util/md5.h

src/fusion/util/md5sum.cpp

src/fusion/util/md5sum.h

src/fusion/util/test-md5sum.cpp

src/fusion/util/test-tmpfilefactory.cpp

src/fusion/util/util-meminfo.cpp

tests/convertCel.R tests/readCdfDataFrame.R tests/readCdfQc.R tests/readCdfUnitsWriteMap.R tests/readCdfUnits_etal.R tests/readCel.R tests/readCelIntensities.R tests/readCelRectangle.R tests/readCelUnits.R tests/readPgf.R tests/testWriteAndReadEmptyCdf.R tests/testWriteAndReadEmptyCel.R tests/torture/tortureReadCdfUnits.R tests/torture/tortureReadCel.R tests/torture/tortureReadCelHeader.R tests/torture/tortureReadCelUnits.R tests/validate/validateCelFileFormats.R

HenrikBengtsson/affxparser documentation built on Feb. 9, 2024, 3:13 a.m.

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