API for HelenaLC/muscat
Multi-sample multi-group scRNA-seq data analysis tools

Global functions
.DESeq2	Source code
.check_arg_assay	Source code
.check_args_aggData	Source code
.check_args_mmDS	Source code
.check_args_pbDS	Source code
.check_args_pbHeatmap	Source code
.check_args_simData	Source code
.check_frq	Source code
.check_pbs	Source code
.check_res	Source code
.check_sce	Source code
.edgeR	Source code
.filter_matrix	Source code
.filter_sce	Source code
.fit_bglmer	Source code
.fit_lmer	Source code
.fit_nbinom	Source code
.get_clusters_from_phylo	Source code
.get_ns	Source code
.impute_shared_type_genes	Source code
.impute_type_genes	Source code
.limma	Source code
.limma_trend	Source code
.limma_voom	Source code
.make_ei	Source code
.mm_dream	Man page Source code
.mm_dream2	Man page Source code
.mm_eBayes	Source code
.mm_glmm	Man page Source code
.mm_hybrid	Source code
.mm_nbinom	Source code
.mm_poisson	Source code
.mm_vst	Man page Source code
.n_cells	Source code
.nb	Source code
.p_adj_global	Source code
.pb	Source code
.prep_cd	Source code
.read_branch	Source code
.res_DX	Source code
.res_df	Source code
.sample_cell_md	Source code
.sample_gene_inds	Source code
.scale	Source code
.sim	Source code
.split_cells	Source code
.toySCE	Source code
.update_sce	Source code
.vst_DESeq2	Source code
.vst_sctransform	Source code
.z_norm	Source code
aggregateData	Man page Source code
calcExprFreqs	Man page Source code
data	Man page
example_sce	Man page
mmDS	Man page Source code
pbDD	Man page Source code
pbDS	Man page Source code
pbFlatten	Man page Source code
pbHeatmap	Man page Source code
pbMDS	Man page Source code
prepSCE	Man page Source code
prepSim	Man page Source code
resDS	Man page Source code
simData	Man page Source code
stagewise_DS_DD	Man page Source code