package: Chromosome plus MT plus rDNA sequences for riz (based on...

In HediaTnani/BSgenome.Oryza: Chromosome plus MT plus rDNA sequences for riz (based on ensembl)

Description

Oryza sativa full genome as provided by MSU (MSU7 Genome Release) and stored in Biostrings objects.

Note

This BSgenome data package was made from the following source data files:

-- information not available --
  

See ?BSgenomeForge and the BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Author(s)

thlithi hiba

See Also

• BSgenome objects and the available.genomes function in the BSgenome software package.

• DNAString objects in the Biostrings package.

• The BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Examples

BSgenome.Oryza
genome <- BSgenome.Oryza
head(seqlengths(genome))


## ---------------------------------------------------------------------
## Genome-wide motif searching
## ---------------------------------------------------------------------
## See the GenomeSearching vignette in the BSgenome software
## package for some examples of genome-wide motif searching using
## Biostrings and the BSgenome data packages:
if (interactive())
    vignette("GenomeSearching", package="BSgenome")

HediaTnani/BSgenome.Oryza documentation built on May 20, 2020, 12:33 a.m.