README.md

In HCBravoLab/ribosomaldatabaseproject11.5MgDb: Ribosomal Database Project 16S rRNA release 11.5 Annotation Data

This is a Bioconductor Annotation package with the Ribosomal Database Project Release 11.5 for use with the metagenomeFeatures package (https://bioconductor.org/packages/release/bioc/html/metagenomeFeatures.html). The release version of the annotation package is available at Bioconductor (https://bioconductor.org).

To install the development version of the package: 1. install metagenomeFeatures, this can be done using devtools install_github("HCBravoLab/metagenomeFeatures") 2. clone this repository git clone https://github.com/HCBravoLab/ribosomaldatabaseproject11.5MgDb.git

1. download the database sequence data and generate the metadata and database file using the get_rdp11.5MgDb.R script in inst/scripts.

2. install ribosomaldatabaseproject11.5MgDb, this can be done using devtools install_local("local/path/ribosomaldatabaseproject11.5MgDb"), replace local/path with the path to the downloaded git repo.

The metagenomeFeatures package has vignettes on working with MgDb-class formated sequence databases.

HCBravoLab/ribosomaldatabaseproject11.5MgDb documentation built on May 19, 2019, 10:47 p.m.