startTreeviz: Start treeviz app and create 'TreeVizApp' object to manage...

In HCBravoLab/TreeViz: R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations

Description

Start treeviz app and create TreeVizApp object to manage connection.

Usage

startTreeviz(
  data = NULL,
  genes = NULL,
  top_genes = 100,
  host = "http://epiviz.cbcb.umd.edu/treeviz",
  register_function = .register_all_treeviz_things,
  delay = 2L,
  ...
)

Arguments

data	TreeViz object to explore
genes	(character vector) genes (rownames) to include in heatmap
top_genes	(integer) number of top variable genes to include in the heatmap
host	(character) host address to launch.
register_function	(function) function used to register actions and charts on the treeviz app.
delay	(integer) number of seconds to wait for application to load in browser
...	additional parameters passed to startEpiviz.

Value

An object of class TreeVizApp

See Also

TreeVizApp

Examples

# see package vignette for example usage
app <- startTreeviz(non_interactive=TRUE, open_browser=FALSE)
app$stop_app()

HCBravoLab/TreeViz documentation built on Sept. 29, 2021, 4:31 a.m.