write.beast: write.beast

In GuangchuangYu/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

write.beast

Description

Export treedata object to BEAST NEXUS file. This function was adopted and modified from ape::write.nexus

Usage

write.beast(treedata, file = "", translate = TRUE, tree.name = NULL)

Arguments

treedata	treedata object, list of treedata, phylo, or list of phylo
file	output file. If file = "", print the output content on screen
translate	whether to translate taxa labels
tree.name	names of the trees, NULL to use existing tree names

Value

output file or file content on screen

Author(s)

Guangchuang Yu

Examples

nhxfile <- system.file("extdata/NHX", "phyldog.nhx", package="treeio")
nhx <- read.nhx(nhxfile)
write.beast(nhx)

GuangchuangYu/treeio documentation built on Oct. 31, 2024, 10:13 a.m.