CONTRIBUTORS.md

In GuangchuangYu/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

Bradley Jones

• beast1 tree support
• https://github.com/GuangchuangYu/treeio/pull/4

Casey Dunn

• drop.tip method
• https://github.com/GuangchuangYu/ggtree/pull/90
• https://github.com/GuangchuangYu/ggtree/pull/97
• https://github.com/GuangchuangYu/treeio/pull/2
• add tip number in NHX annotation data
• https://github.com/GuangchuangYu/ggtree/pull/83
• use textConnection to pass string to the file parameter.
• https://github.com/GuangchuangYu/ggtree/pull/55

Shuangbin Xu

• parse phyloxml file
• https://github.com/YuLab-SMU/treeio/pull/27
• https://github.com/YuLab-SMU/treeio/pull/28
• parse n and nm in jplace when they coexists
• https://github.com/YuLab-SMU/treeio/pull/19
• jplace version 1 support
• https://github.com/YuLab-SMU/treeio/pull/25

Tyler Bradley

• tree_subset methods for phylo and treedata objects
• https://github.com/GuangchuangYu/treeio/pull/8

Konstantinos Geles

• prototype of as.treedata method for pvclust object

GuangchuangYu/treeio documentation built on Oct. 31, 2024, 10:13 a.m.