geom_tree: geom_tree

In GuangchuangYu/ggtree: an R package for visualization of tree and annotation data

geom_tree

Description

add tree layer

Usage

geom_tree(
  mapping = NULL,
  data = NULL,
  layout = "rectangular",
  multiPhylo = FALSE,
  continuous = "none",
  position = "identity",
  ...
)

Arguments

mapping	aesthetic mapping
data	data of the tree
layout	one of 'rectangular', 'dendrogram', 'slanted', 'ellipse', 'roundrect', 'fan', 'circular', 'inward_circular', 'radial', 'equal_angle', 'daylight' or 'ape'
multiPhylo	logical, whether input data contains multiple phylo class, defaults to "FALSE".
continuous	character, continuous transition for selected aesthethic ('size' or 'color'('colour')). It should be one of 'color' (or 'colour'), 'size', 'all' and 'none', default is 'none'
position	Position adjustment, either as a string, or the result of a call to a position adjustment function, default is "identity".
...	additional parameter some dot arguments: nsplit integer, the number of branch blocks divided when 'continuous' is not "none", default is 200.

Value

tree layer

Aesthetics

geom_tree() understands the following aesthethics:

• color character, control the color of line, default is black (continuous is "none").

• linetype control the type of line, default is 1 (solid).

• linewidth numeric, control the width of line, default is 0.5 (continuous is "none").

Author(s)

Yu Guangchuang

References

For demonstration of this function, please refer to chapter 4.2.1 of Data Integration, Manipulation and Visualization of Phylogenetic Trees http://yulab-smu.top/treedata-book/index.html by Guangchuang Yu.

Examples

tree <- rtree(10)
ggplot(tree) + geom_tree()

GuangchuangYu/ggtree documentation built on Oct. 31, 2024, 10:10 a.m.