build_lineage: Build the lineage from a SILVA path string.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
build_lineage R Documentation
Build the lineage from a SILVA path string.
Description
Build the lineage from a SILVA path string.
Usage
build_lineage(silva_path, taxid, taxonomy)
Arguments
silva_path
A string containing a taxonomy path with taxa separated
by semicolons.
taxid
The overall taxid for the path/taxon.
taxonomy
The SILVA taxonomy as data table.
Value
A data table containing the individual taxa ranks with ids.
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| build_lineage | R Documentation |
Build the lineage from a SILVA path string.
Description
Build the lineage from a SILVA path string.
Usage
build_lineage(silva_path, taxid, taxonomy)
Arguments
silva_path |
A string containing a taxonomy path with taxa separated by semicolons. |
taxid |
The overall taxid for the path/taxon. |
taxonomy |
The SILVA taxonomy as data table. |
Value
A data table containing the individual taxa ranks with ids.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.