merge_same_tf: Merge overlapping TFBS
In GabrielHoffman/tfbsDB: Store and plot TFBS sites from HOCOMOCO v11 scored by FIMO
Description
Usage
Arguments
Value
View source: R/tfbsDB_parse_and_plot.R
Description
Merge adjacent TFBS that overlap by at least minfrac
Usage
1
merge_same_tf(gr, minfrac = 0.05, fxn = min)
Arguments
gr
GRange object of TFBS
minfrac
minimum overlap between to windows to merge TFBS's
fxn
score of merged interval is the assigned as fxn(score(.)) of overlapping intervals
Value
non-redundant set of intervals as GRanges
GabrielHoffman/tfbsDB documentation built on June 23, 2020, 5:29 a.m.
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Description Usage Arguments Value
View source: R/tfbsDB_parse_and_plot.R
Description
Merge adjacent TFBS that overlap by at least minfrac
Usage
1 | merge_same_tf(gr, minfrac = 0.05, fxn = min)
|
Arguments
gr |
GRange object of TFBS |
minfrac |
minimum overlap between to windows to merge TFBS's |
fxn |
score of merged interval is the assigned as fxn(score(.)) of overlapping intervals |
Value
non-redundant set of intervals as GRanges
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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