README.md

In FrietzeLabUVM/peaksat: Peak saturation processing and analysis

peaksat

R package to do peak saturation analysis for ChIP-seq (and other) data.

Please see this overview for installation and basic usage instructions.

Setup Notes

Depends on macs2 and samtools being installed and executable.

So far this has only been tested on a Linux system but should work if macs2, samtools, and bash are present.

Will use either the Sun Grid Engine (SGE) or SLURM (This is a work in progress) job schedulers if they're present, otherwise will run all tasks in serial using standard bash and R's mclapply for parallelization.

Installation

Installing from github is simple if you have devtools installed.

devtools::install_github("FrietzeLabUVM/peaksat")

FrietzeLabUVM/peaksat documentation built on Oct. 2, 2024, 7:07 p.m.