README.md

In FelixErnst/RNAmodR.AlkAnilineSeq: Detection of m7G, m3C and D modification by AlkAnilineSeq

RNAmodR.AlkAnilineSeq

RNAmodR.AlkAnilineSeq uses classes and workflows from RNAmodR to detect m7G, m3C and D in RNASeq data specifically treated according to the AlkAnilineSeq protocol.

The vignette from the RNAmodR.AlkAnilineSeq package provides details on the specific analysis of AlkAnilineSeq data. Have a look at the vignette from the RNAmodR package for a general description on the provided workflows.

Installation

The current version of the RNAmodR.AlkAnilineSeq package is available from Bioconductor.

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAmodR.AlkAnilineSeq")
library(RNAmodR.AlkAnilineSeq)

Literature

• Marchand, Virginie, Lilia Ayadi, Felix G. M. Ernst, Jasmin Hertler, Valérie Bourguignon-Igel, Adeline Galvanin, Annika Kotter, Mark Helm, Denis L. J. Lafontaine, and Yuri Motorin. 2018. “AlkAniline-Seq: Profiling of m7G and m3C Rna Modifications at Single Nucleotide Resolution.” Angewandte Chemie International Edition 57 (51): 16785–90. https://doi.org/10.1002/anie.201810946.

FelixErnst/RNAmodR.AlkAnilineSeq documentation built on Jan. 25, 2021, 3:58 a.m.