filterBedpe: Filters out short BEDPE interactions
In EricSDavis/hictoolsr: An R Package for Hi-C Data Analysis
filterBedpe R Documentation
Filters out short BEDPE interactions
Description
Interactions from a BEDPE file that would result in APA plots intersecting the diagonal
(given a resolution and buffer size) are removed from the BEDPE file.
Usage
filterBedpe(bedpe, res, buffer)
Arguments
bedpe
data.frame or data.table in BEDPE format
res
integer resolution of bedpe bins
buffer
integer number of res-length bins from the center pixel
Value
Returns a filtered BEDPE
EricSDavis/hictoolsr documentation built on Sept. 4, 2022, 12:36 a.m.
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| filterBedpe | R Documentation |
Filters out short BEDPE interactions
Description
Interactions from a BEDPE file that would result in APA plots intersecting the diagonal (given a resolution and buffer size) are removed from the BEDPE file.
Usage
filterBedpe(bedpe, res, buffer)
Arguments
bedpe |
data.frame or data.table in BEDPE format |
res |
integer resolution of bedpe bins |
buffer |
integer number of res-length bins from the center pixel |
Value
Returns a filtered BEDPE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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