check_tmhmm_install: Check to make sure TMHMM 2.0 is installed in the file path...

In EliLillyCo/surfaltr: Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr

Check to make sure TMHMM 2.0 is installed in the file path specified

Description

This function checks to make sure that TMHMM is installed correctly at the file path specified by the user. If TMHMM is not installed correctly, then the function will output an error message telling the user to check their installation.

Usage

check_tmhmm_install(tmhmm_folder_name)

Arguments

tmhmm_folder_name

Full path to folder containing installed TMHMM 2.0 software. This value should end in TMHMM2.0c

Value

A Boolean stating if TMHMM is installed correctly, will be TRUE if TMHMM 2.0 is located at the path specified and FALSE if it is not.

Note

This function also prints a helpful method providing tips on how to fix the installation if TMHMM is not found at the folder path specified.

Examples

tmhmm_folder_name <- "~/TMHMM2.0c"
install_correct <- check_tmhmm_install(tmhmm_folder_name)

EliLillyCo/surfaltr documentation built on May 3, 2022, 10:12 a.m.