plotSummaryStats: Plot summary statistics for a GInteractions object

In ComputationalRegulatoryGenomicsICL/GenomicInteractions: Utilities for handling genomic interaction data

Plot summary statistics for a GInteractions object

Description

Makes summary plots of the counts, interaction distances, interaction annotations, and percentage of cis and trans interactions for a GInteractions object using 'plotCounts', 'plotDists', 'plotCisTrans', and 'plotInteractionAnnotations'.

Usage

plotSummaryStats(GIObject, other = 5, cut = 10)

Arguments

GIObject	A GInteractions object
other	Default 5. Passed to plotInteractionAnnotations. Interaction types making up fewer than 'other' percent of the total interactions will be consolidated into a single 'other' category.
cut	Default 10. Passed to plotCounts.All interactions with counts > cut are consolidated into a single category.

Value

invisible(1)

Examples

data(hic_example_data)
plotSummaryStats(hic_example_data)

ComputationalRegulatoryGenomicsICL/GenomicInteractions documentation built on April 16, 2022, 4:09 a.m.