setters: Functions to set data held in a GInteractions object.

In ComputationalRegulatoryGenomicsICL/GenomicInteractions-new: Utilities for handling genomic interaction data

Functions to set data held in a GInteractions object.

Description

Use these functions to set data stored in each of the slots of a GInteractions object.

Usage

name(GIObject) <- value

interactionCounts(GIObject) <- value

## S4 replacement method for signature 'GInteractions'
name(GIObject) <- value

## S4 replacement method for signature 'GInteractions,ANY'
description(object) <- value

## S4 replacement method for signature 'GInteractions'
interactionCounts(GIObject) <- value

Arguments

GIObject	A GenomicInteractions object
value	A vector to replace a slot in the object
object	Object, possibly derived from class eSet-class.

Value

GenomicInteractions object

Examples

library(GenomicRanges)

anchor.one = GRanges(c('chr1', 'chr1', 'chr1', 'chr1'), IRanges(c(10, 20, 30, 20), width=5))
anchor.two = GRanges(c('chr1', 'chr1', 'chr1', 'chr2'), IRanges(c(100, 200, 300, 50), width=5))
interaction_counts = sample(1:10, 4)
test <- GenomicInteractions(anchor.one, anchor.two, experiment_name='test', 
                           description='this is a test', counts=interaction_counts)

name(test) <- 'Mouse test'
name(test)

description(test) <- 'This is a test using the mouse genome'
description(test)

interactionCounts(test) <- c(2,3,8,5)
interactionCounts(test)

ComputationalRegulatoryGenomicsICL/GenomicInteractions-new documentation built on April 10, 2022, 5:39 p.m.