plotSigScatter: Takes an NormalyzerStatistics instance and generates and...

In ComputationalProteomics/NormalyzerDE: Evaluation of normalization methods and calculation of differential expression analysis statistics

Takes an NormalyzerStatistics instance and generates and prints a volcano plot

Description

Takes an NormalyzerStatistics instance and generates and prints a volcano plot

Usage

plotSigScatter(
  nst,
  jobName,
  currentLayout,
  pageno,
  type = "Volcano",
  sigThres = 0.1,
  sigThresType = "fdr",
  log2FoldThres = 0
)

Arguments

nst	NormalyzerDE statistics object.
jobName	Name of processing run.
currentLayout	Layout used for document.
pageno	Current page number.
type	Specify whether to plot 'Volcano' or 'MA'.
sigThres	FDR threshold for DE coloring.

Value

None

ComputationalProteomics/NormalyzerDE documentation built on Oct. 18, 2024, 9:57 p.m.