simulate_data: Generate dataset for vignettes and simulation studies

In ChristofSeiler/cytoeffect: Regression Models with Multivariate Outcomes for Mass Cytometry Experiments

Generate dataset for vignettes and simulation studies

Description

Generate dataset for vignettes and simulation studies

Usage

simulate_data(
  n_markers = 5,
  n_true = 1,
  n_samples = 8,
  paired = TRUE,
  n_cells = 100,
  pi = 0.05,
  beta_treatment = log(20),
  beta_control = log(5),
  rho_b = 0.5,
  rho_u = 0.5
)

Arguments

n_markers	number of markers
n_true	number of differential markers
n_samples	donors per group
paired	paired experimental design
n_cells	per sample
pi	zero inflation probability
beta_treatment	log of mean in treatment
beta_control	log of mean in control
rho_b	cell level correlation
rho_u	donor level correlation

Value

tibble data frame

Examples

set.seed(1)
df = simulate_data(n_cells = 10)
str(df)
df

ChristofSeiler/cytoeffect documentation built on Jan. 11, 2023, 1:05 p.m.