readTarget: READ THE TARGET FILE
In ChristelleReynes/ISoLDE: Integrative Statistics of alleLe Dependent Expression

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/readTarget.R

Checks and loads into a data.frame your target input file.

1	readTarget(target_file, asr_counts, del = "\t")

`target_file`	A character-delimited text input file, containing metadata about ASR counts files (see `target_file.txt`).
`asr_counts`	The `data.frame` containing values of ASR counts (obtained either by the `readRawInput` or the `readNormInput` function). It is used to perform checks on compatibility with the target file.
`del`	Specifies the delimiter for the target input file, usually a semi-colon ";", a coma "," or a tabulation "\t". (default : "\t"). Note : None of your data values must contain this delimiter (be specially careful in gene names).

See target_file.txt for more details about the target_file format.

a data.frame containing the target.

Marine Rohmer marine.rohmer@mgx.cnrs.fr,
Christelle Reynès christelle.reynes@igf.cnrs.fr

target_file.txt: the metadata file on which to run the readTarget function.

  # Target input file
  targetfile <- system.file("extdata", "target_file.txt", 
  package = "ISoLDE")
  # The data.frame containing ASR counts is also required
  data(rawASRcounts)
  # Load into a data.frame and check the target file
  target <- readTarget(target_file = targetfile, 
  asr_counts = rawASRcounts, del = "\t")