Files in CharlesJB/metagene
A package to produce metagene plots
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/Utilities.R
R/bam_handler.R
R/data.R
R/demo.R
R/metagene.R
R/ncis.R
R/normalization.R
R/parallel_job.R
R/permutation.R
R/plot_metagene.R
R/stats.R
R/sysdata.rda
README.md
data/promoters_hg18.RData
data/promoters_hg19.RData
data/promoters_mm10.RData
data/promoters_mm9.RData
inst/extdata/DPM1.bed
inst/extdata/DPM1less.bed
inst/extdata/NDUFAB1.bed
inst/extdata/NDUFAB1less.bed
inst/extdata/align1.rep1.bam
inst/extdata/align1.rep1.bam.bai
inst/extdata/align1_rep1.bam
inst/extdata/align1_rep1.bam.bai
inst/extdata/align1_rep1.bed
inst/extdata/align1_rep2.bam
inst/extdata/align1_rep2.bam.bai
inst/extdata/align2_rep1.bam
inst/extdata/align2_rep1.bam.bai
inst/extdata/align2_rep2.bam
inst/extdata/align2_rep2.bam.bai
inst/extdata/coverage.bam
inst/extdata/coverage.bam.bai
inst/extdata/ctrl.bam
inst/extdata/ctrl.bam.bai
inst/extdata/ctrl.bed
inst/extdata/cyto3.bam
inst/extdata/cyto3.bam.bai
inst/extdata/cyto4.bam
inst/extdata/cyto4.bam.bai
inst/extdata/design.txt
inst/extdata/different_header.bam
inst/extdata/different_header.bam.bai
inst/extdata/list1.bed
inst/extdata/list1.broadPeak
inst/extdata/list1.narrowPeak
inst/extdata/list1.txt
inst/extdata/list2.bed
inst/extdata/list2.txt
inst/extdata/list_coverage.bed
inst/extdata/lists.bed
inst/extdata/not_indexed.bam
inst/extdata/nuc3.bam
inst/extdata/nuc3.bam.bai
inst/extdata/nuc4.bam
inst/extdata/nuc4.bam.bai
inst/extdata/test.gff
inst/extdata/test.gtf
inst/unitTests/Makefile
inst/unitTests/test_bam_handler.R
inst/unitTests/test_demo.R
inst/unitTests/test_metagene.R
inst/unitTests/test_metagene_RNAseq.r
inst/unitTests/test_parallel_job.R
inst/unitTests/test_permutation.R
inst/unitTests/test_stats.R
inst/unitTests/test_utilities.R
man/Bam_Handler.Rd
man/avoid_gaps_update.Rd
man/bed_file_filter.Rd
man/exon_by_gene_with_observed_transcripts.Rd
man/get_demo_bam_files.Rd
man/get_demo_design.Rd
man/get_demo_metagene.Rd
man/get_demo_regions.Rd
man/get_promoters_txdb.Rd
man/metagene.Rd
man/permutation_test.Rd
man/plot_metagene.Rd
man/promoters_hg18.Rd
man/promoters_hg19.Rd
man/promoters_mm10.Rd
man/promoters_mm9.Rd
man/write_bed_file_filter_result.Rd
tests/runTests.R
vignettes/metagene.Rmd
vignettes/metagene_rnaseq.Rmd
