import_bedgraph: Import bedgraph files

In CharlesJB/HeatmapsTools: What the Package Does (One Line, Title Case)

Import bedgraph files

Description

Import bedgraph files

Usage

import_bedgraph(
  filename,
  filter_negative_coverages = TRUE,
  keep_standard_chromosomes = TRUE,
  genome = NULL
)

Arguments

filename	Paths to a valid bedGraph file.
filter_negative_coverages	Convert negative coverage values to 0? (Default: TRUE)
keep_standard_chromosomes	Remove alternative chromosomes? (Default: TRUE)
genome	The name of the genome (i.e.: "hg38", "mm10", etc...)

Value

A list of GRanges (one element per file).

Examples

filenames <- get_demo_bdg()
cov <- import_bedgraph(filenames)

CharlesJB/HeatmapsTools documentation built on Nov. 5, 2023, 9:46 a.m.