dot-geneXtender: Function for formatting data to be called by C function.

In Bohdan-Khomtchouk/geneXtendeR: Optimized Functional Annotation Of ChIP-seq Data

Description

Formats genome-data based on upstream and organism for .C caller function. Not to be run by user.

Usage

.geneXtender(upstream, organism, ret = FALSE)

Arguments

upstream	Extension upstream of each gene.
organism	Object name assigned from readGFF() command.
ret	Logical that designates if the output is written in R or only as a .bed file

Value

The gene coordinates extended by the designated upstream. In .bed file format.

A data.table formatted version of the data depending on the ret logical.

Note

Not to be run by the user

Bohdan-Khomtchouk/geneXtendeR documentation built on June 9, 2019, 2:53 a.m.