geneSignatures: Generating the feature/gene signature per cluster

In BioSok/omada: Machine learning tools for automated transcriptome clustering analysis

Generating the feature/gene signature per cluster

Description

Generating the feature/gene signature per cluster

Usage

geneSignatures(data, memberships)

Arguments

data	A dataframe, where columns are features and rows are data points.
memberships	A dataframe with column "id" (same samples ids as above) and column "membership" containing the cluster membership of each sample. The memberships must be strings

Value

An object of class "geneSignature" containing a list of LASSO (regression analysis) coefficients of each gene and a plot of the highest 30

Examples

geneSignatures(toy_genes, toy_gene_memberships)

BioSok/omada documentation built on Aug. 21, 2023, 2:38 p.m.