Files in BioSok/omada

Machine learning tools for automated transcriptome clustering analysis

R/cluster_voting.R R/clustering_method_selection.R R/feasibility_analysis_based_on_data.R R/feasibilty_analysis.R R/feature_selection.R R/gene_singatures.R R/genes-data.R R/genes-memberships-data.R R/get_agreement_scores.R R/get_average_feature_k_stabilities.R R/get_average_stabilities_per_k.R R/get_average_stability.R R/get_cluster_memberships_k.R R/get_cluster_voting_k_votes_omada.R R/get_cluster_voting_memberships_omada.R R/get_cluster_voting_metric_votes_omada.R R/get_cluster_voting_scores_omada.R R/get_coefficient_dataset.R R/get_feature_selection_optimal_features_omada.R R/get_feature_selection_optimal_number_of_features_omada.R R/get_feature_selection_scores_omada.R R/get_generated_dataset.R R/get_internal_metric_scores.R R/get_max_stability.R R/get_metric_votes_k.R R/get_optimal_features.R R/get_optimal_memberships.R R/get_optimal_number_of_features.R R/get_optimal_parameter_used.R R/get_optimal_stability_score.R R/get_partition_agreement_scores.R R/get_partition_agreement_scores_omada.R R/get_sample_memberships_omada.R R/get_signature_feature_coefs_omada.R R/get_top30percent_coefficients.R R/get_vote_frequencies_k.R R/omada.R R/optimal_clustering.R R/partition_agreement.R R/plot_average_stabilities.R R/plot_cluster_voting_omada.R R/plot_feature_selection_omada.R R/plot_partition_agreement.R R/plot_partition_agreement_omada.R R/plot_signature_feature_omada.R R/plot_top30percent_coefficients.R R/plot_vote_frequencies.R man/clusterVoting.Rd man/clusteringMethodSelection.Rd man/feasibilityAnalysis.Rd man/feasibilityAnalysisDataBased.Rd man/featureSelection.Rd man/geneSignatures.Rd man/get_agreement_scores.Rd man/get_average_feature_k_stabilities.Rd man/get_average_stabilities_per_k.Rd man/get_average_stability.Rd man/get_cluster_memberships_k.Rd man/get_cluster_voting_k_votes.Rd man/get_cluster_voting_memberships.Rd man/get_cluster_voting_metric_votes.Rd man/get_cluster_voting_scores.Rd man/get_coefficient_dataset.Rd man/get_feature_selection_optimal_features.Rd man/get_feature_selection_optimal_number_of_features.Rd man/get_feature_selection_scores.Rd man/get_generated_dataset.Rd man/get_internal_metric_scores.Rd man/get_max_stability.Rd man/get_metric_votes_k.Rd man/get_optimal_features.Rd man/get_optimal_memberships.Rd man/get_optimal_number_of_features.Rd man/get_optimal_parameter_used.Rd man/get_optimal_stability_score.Rd man/get_partition_agreement_scores.Rd man/get_sample_memberships.Rd man/get_signature_feature_coefs.Rd man/get_top30percent_coefficients.Rd man/get_vote_frequencies_k.Rd man/omada.Rd man/optimalClustering.Rd man/partitionAgreement.Rd man/plot_average_stabilities.Rd man/plot_cluster_voting.Rd man/plot_feature_selection.Rd man/plot_partition_agreement.Rd man/plot_signature_feature.Rd man/plot_top30percent_coefficients.Rd man/plot_vote_frequencies.Rd man/toy_gene_memberships.Rd man/toy_genes.Rd tests/testthat.R tests/testthat/test_clusterVoting.R tests/testthat/test_clusteringMethodSelection.R tests/testthat/test_featureSelection.R tests/testthat/test_partitionAgreement.R vignettes/omada-vignette.Rmd