tx_add_misincRateNucSpec: Nucleotide specific misincorporation rate

In AngelCampos/tx_tools: An R package facilitating analysis of RNA modifications, structures, and interactions

Nucleotide specific misincorporation rate

Description

Calculates the misincorporation rate from a reference nucleotide to an specific misincorporated nucleotide. For example, when looking for positions in cytidines that were read as thymine in RNA after bisulphite treatment.

Usage

tx_add_misincRateNucSpec(DT, refNuc, misNuc, minNucReads = 20)

Arguments

DT	data.table. A table as output by the tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
refNuc	Reference nucleotide See tx_add_refSeqDT()
misNuc	Misincorporated nucleotide
minNucReads	Minimum number of nucleotides read needed to calculate misincorporation rate

Value

data.table

AngelCampos/tx_tools documentation built on Sept. 17, 2024, 1:27 a.m.