crossTabGOIDsUnrestricted: crossTabGOIDsUnrestricted

In ASPresearch/equivStandardTest: Implements a standard test of equivalence as described in (Sanchez et alt. 2019)

crossTabGOIDsUnrestricted

Description

This function performs a crosstabulation between two lists of enriched GOTerms The lists are intended to have been obtained from enrichment analyses performed on two gene lists

Usage

crossTabGOIDsUnrestricted(GO1, GO2, onto, GOLevel, listNames = NULL)

Arguments

GO1	character vector containing a FIRST list of GO identifiers
GO2	character vector containing a SECOND gene list GO identifiers
onto	string describing the ontology. Belongs to c('BP', 'MF', 'CC', 'ANY')
listNames	character vector with names of the genelists that generated the enriched GOIDs
GOLev	An integer

Examples

 data(kidneyEnrichedGOIDs)
 GOIDs1 <-kidneyEnrichedGOIDs[[1]]
 GOIDs2 <-kidneyEnrichedGOIDs[[2]]
 names4lists<- names(kidneyEnrichedGOIDs)[1:2]
 anOnto <- 'BP'
 GOLev<- 3
 crossTabbedGOIds <- crossTabGOIDsUnrestricted (GO1 = GOIDs1, GO2 = GOIDs2, onto = anOnto, 
 GOLevel =GOLev, listNames=names4lists)

ASPresearch/equivStandardTest documentation built on March 28, 2022, 4:31 p.m.