snprelate_ld: Wrapper for snpgdsLDMat to compute r2
In snplinkage: Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations
snprelate_ld R Documentation
Wrapper for snpgdsLDMat to compute r2
Description
Wrapper for snpgdsLDMat to compute r2
Usage
snprelate_ld(
gdata,
window_size = 0,
min_r2 = 0,
snps_idx = NULL,
scans_idx = NULL,
threads = 1,
quiet = FALSE
)
Arguments
gdata
A GenotypeData object
window_size
Max number of SNPs in LD window, 0 for no window
min_r2
Minimum r2 value to report
snps_idx
Indices of snps to use
scans_idx
Indices of scans to use
threads
The number of threads to use
quiet
Whether to be quiet
Value
A data frame with columns SNP_A, SNP_B, R2 for r2 >= min_r2
snplinkage documentation built on Sept. 11, 2024, 6:02 p.m.
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| snprelate_ld | R Documentation |
Wrapper for snpgdsLDMat to compute r2
Description
Wrapper for snpgdsLDMat to compute r2
Usage
snprelate_ld(
gdata,
window_size = 0,
min_r2 = 0,
snps_idx = NULL,
scans_idx = NULL,
threads = 1,
quiet = FALSE
)
Arguments
gdata |
A GenotypeData object |
window_size |
Max number of SNPs in LD window, 0 for no window |
min_r2 |
Minimum r2 value to report |
snps_idx |
Indices of snps to use |
scans_idx |
Indices of scans to use |
threads |
The number of threads to use |
quiet |
Whether to be quiet |
Value
A data frame with columns SNP_A, SNP_B, R2 for r2 >= min_r2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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