R/RcppExports.R

In smer: Sparse Marginal Epistasis Test

# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

check_openmp <- function() {
    .Call('_smer_check_openmp', PACKAGE = 'smer')
}

count_samples <- function(filename) {
    .Call('_smer_count_samples', PACKAGE = 'smer', filename)
}

count_fam <- function(filename) {
    .Call('_smer_count_fam', PACKAGE = 'smer', filename)
}

count_snps_bim <- function(filename) {
    .Call('_smer_count_snps_bim', PACKAGE = 'smer', filename)
}

createH5File <- function(filename) {
    invisible(.Call('_smer_createH5File', PACKAGE = 'smer', filename))
}

readH5File <- function(filename, datasetName) {
    .Call('_smer_readH5File', PACKAGE = 'smer', filename, datasetName)
}

replaceH5Dataset <- function(filename, datasetName, newData) {
    invisible(.Call('_smer_replaceH5Dataset', PACKAGE = 'smer', filename, datasetName, newData))
}

simulate_traits_cpp <- function(plink_file, additive_heritability, gxg_heritability, additive_snps, gxg_group_1, gxg_group_2) {
    .Call('_smer_simulate_traits_cpp', PACKAGE = 'smer', plink_file, additive_heritability, gxg_heritability, additive_snps, gxg_group_1, gxg_group_2)
}

sme_cpp <- function(plink_file, pheno_file, genotype_mask_file, n_randvecs, n_blocks, rand_seed, gxg_indices, n_threads, gxg_h5_dataset, ld_h5_dataset) {
    .Call('_smer_sme_cpp', PACKAGE = 'smer', plink_file, pheno_file, genotype_mask_file, n_randvecs, n_blocks, rand_seed, gxg_indices, n_threads, gxg_h5_dataset, ld_h5_dataset)
}