Files in smer
Sparse Marginal Epistasis Test
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/sme.R
R/hdf5_api.R
R/simulate_traits.R
R/catch-routine-registration.R
R/approximate_memory_requirements.R
R/getting_started.R
src/allocate_memory.h
src/simulate_traits.cpp
src/Makevars
src/read_phenotypes.cpp
src/sme.h
src/test-runner.cpp
src/read_genotypes.h
src/compute_covariance_q.cpp
src/read_genotype_mask.h
src/compute_mom_components.h
src/RcppExports.cpp
src/count_data.cpp
src/testing_utils.h
src/compute_covariance_q.h
src/compute_mom_components.cpp
src/testing_utils.cpp
src/read_phenotypes.h
src/initialize_random_vectors.cpp
src/count_data.h
src/set_metadata.h
src/mailman.h
src/computation.cpp
src/computation.h
src/sme.cpp
src/initialize_random_vectors.h
src/hdf5_api.cpp
src/read_covariates.cpp
src/read_genotypes.cpp
src/allocate_memory.cpp
src/genotype.h
src/genotype.cpp
src/read_covariates.h
src/check_openmp.cpp
src/read_genotype_mask.cpp
src/simulate_traits.h
src/set_metadata.cpp
inst/include/highfive/H5Utility.hpp
inst/include/highfive/highfive.hpp
inst/include/highfive/H5PropertyList.hpp
inst/include/highfive/H5Object.hpp
inst/include/highfive/H5DataSet.hpp
inst/include/highfive/H5File.hpp
inst/include/highfive/H5Exception.hpp
inst/include/highfive/H5Version.hpp
inst/include/highfive/H5Selection.hpp
inst/include/highfive/H5Group.hpp
inst/include/highfive/H5FileDriver.hpp
inst/include/highfive/H5DataType.hpp
inst/include/highfive/H5DataSpace.hpp
inst/include/highfive/H5Version.hpp.in
inst/include/highfive/H5Reference.hpp
inst/include/highfive/H5Easy.hpp
inst/include/highfive/H5Attribute.hpp
inst/include/highfive/h5easy_bits/H5Easy_scalar.hpp
inst/include/highfive/h5easy_bits/H5Easy_Eigen.hpp
inst/include/highfive/h5easy_bits/H5Easy_vector.hpp
inst/include/highfive/h5easy_bits/H5Easy_misc.hpp
inst/include/highfive/h5easy_bits/H5Easy_xtensor.hpp
inst/include/highfive/h5easy_bits/H5Easy_opencv.hpp
inst/include/highfive/h5easy_bits/H5Easy_public.hpp
inst/include/highfive/bits/H5ReadWrite_misc.hpp
inst/include/highfive/bits/H5Reference_misc.hpp
inst/include/highfive/bits/H5Node_traits.hpp
inst/include/highfive/bits/H5Node_traits_misc.hpp
inst/include/highfive/bits/H5DataType_misc.hpp
inst/include/highfive/bits/H5Inspector_misc.hpp
inst/include/highfive/bits/H5Annotate_traits_misc.hpp
inst/include/highfive/bits/H5Converter_misc.hpp
inst/include/highfive/bits/H5DataSet_misc.hpp
inst/include/highfive/bits/H5Friends.hpp
inst/include/highfive/bits/H5Object_misc.hpp
inst/include/highfive/bits/H5PropertyList_misc.hpp
inst/include/highfive/bits/string_padding.hpp
inst/include/highfive/bits/H5Annotate_traits.hpp
inst/include/highfive/bits/H5Path_traits.hpp
inst/include/highfive/bits/H5Dataspace_misc.hpp
inst/include/highfive/bits/H5FileDriver_misc.hpp
inst/include/highfive/bits/H5Exception_misc.hpp
inst/include/highfive/bits/H5Slice_traits_misc.hpp
inst/include/highfive/bits/H5Selection_misc.hpp
inst/include/highfive/bits/H5Path_traits_misc.hpp
inst/include/highfive/bits/H5Iterables_misc.hpp
inst/include/highfive/bits/H5Slice_traits.hpp
inst/include/highfive/bits/H5_definitions.hpp
inst/include/highfive/bits/H5Attribute_misc.hpp
inst/include/highfive/bits/H5Utils.hpp
inst/include/highfive/bits/H5File_misc.hpp
inst/doc/study-erythroid-differentiation-data.Rmd
inst/doc/tutorial-cite-us.html
inst/doc/tutorial-memory-optimization.Rmd
inst/doc/tutorial-create-mask-file.html
inst/doc/tutorial-simulate-traits.Rmd
inst/doc/tutorial-memory-optimization.R
inst/doc/tutorial-cite-us.R
inst/doc/smer.R
inst/doc/study-erythroid-differentiation-data.R
inst/doc/tutorial-create-mask-file.Rmd
inst/doc/smer.Rmd
inst/doc/tutorial-simulate-traits.html
inst/doc/tutorial-create-mask-file.R
inst/doc/tutorial-simulate-traits.R
inst/doc/smer.html
inst/doc/study-erythroid-differentiation-data.html
inst/doc/tutorial-memory-optimization.html
inst/doc/tutorial-cite-us.Rmd
inst/testdata/test_2.fam
inst/testdata/test.csv
inst/testdata/test.fam
inst/testdata/test.cov
inst/testdata/test.h5
inst/testdata/test.bim
inst/testdata/test_h2_0.5.pheno
inst/testdata/test_2.bed
inst/testdata/test.bed
inst/testdata/test_2.bim
inst/testdata/test_ld.h5
inst/testdata/allele_count_matrix.txt
build/vignette.rds
tests/testthat.R
tests/testthat/test-simulate_traits.R
tests/testthat/test-sme.R
tests/testthat/test-hdf5_api.R
vignettes/study-erythroid-differentiation-data.Rmd
vignettes/tutorial-memory-optimization.Rmd
vignettes/tutorial-simulate-traits.Rmd
vignettes/tutorial-create-mask-file.Rmd
vignettes/smer.Rmd
vignettes/tutorial-cite-us.Rmd
data/getting_started.rda
man/read_hdf5_dataset.Rd
man/sme.Rd
man/simulate_traits.Rd
man/getting_started.Rd
man/approximate_memory_requirements.Rd
man/write_hdf5_dataset.Rd
man/create_hdf5_file.Rd
man/figures/logo.png
man/figures/sme-schematic-dhs.png
man/figures/README-logo.png
man/figures/sme-schematic-manhattan.png
man/figures/sme-runtime.png
man/figures/sme-shared-rvs.png
man/figures/dhs_manhattan.png
