vcovHC.singleRStaticCountData: Heteroscedasticity-consistent covariance matrix estimation...

In singleRcapture: Single-Source Capture-Recapture Models

Heteroscedasticity-consistent covariance matrix estimation for singleRStaticCountData class

Description

S3 method for vcovHC to handle singleRStaticCountData class objects. Works exactly like vcovHC.default the only difference being that this method handles vector generalised linear models. Updating the covariance matrix in variance/standard error estimation for population size estimator can be done via redoPopEstimation()

Usage

## S3 method for class 'singleRStaticCountData'
estfun(x, ...)

## S3 method for class 'singleRStaticCountData'
bread(x, ...)

## S3 method for class 'singleRStaticCountData'
vcovHC(
  x,
  type = c("HC3", "const", "HC", "HC0", "HC1", "HC2", "HC4", "HC4m", "HC5"),
  omega = NULL,
  sandwich = TRUE,
  ...
)

Arguments

x	a fitted singleRStaticCountData class object.
...	for vcovHC additional optional arguments passed to the following functions: estfun – for empirical estimating functions. hatvalues – for diagonal elements of projection matrix. sandwich – only if sandwich argument in function call was set to TRUE. vcov – when calling bread internally.
type	a character string specifying the estimation type, same as in sandwich::vcovHC.default. HC3 is the default value.
omega	a vector or a function depending on the arguments residuals (i.e. the derivative of log-likelihood with respect to each linear predictor), diaghat (the diagonal of the corresponding hat matrix) and df (the residual degrees of freedom), same as in sandwich::vcovHC.default.
sandwich	logical. Should the sandwich estimator be computed? If set to FALSE only the meat matrix is returned. Same as in sandwich::vcovHC()

Value

Variance-covariance matrix estimation corrected for heteroscedasticity of regression errors

Author(s)

Piotr Chlebicki, Maciej Beręsewicz

See Also

sandwich::vcovHC() redoPopEstimation()

Examples

set.seed(1)
N <- 10000
gender <- rbinom(N, 1, 0.2)
eta <- -1 + 0.5*gender
counts <- rpois(N, lambda = exp(eta))
df <- data.frame(gender, eta, counts)
df2 <- subset(df, counts > 0)
mod1 <-  estimatePopsize(
  formula = counts ~ 1 + gender, 
  data = df2, 
  model = "ztpoisson", 
  method = "optim", 
  popVar = "analytic"
)
require(sandwich)
HC <- sandwich::vcovHC(mod1, type = "HC4")
Fisher <- vcov(mod1, "Fisher") # variance covariance matrix obtained from 
#Fisher (expected) information matrix
HC
Fisher
# usual results
summary(mod1)
# updated results
summary(mod1, cov = HC,
popSizeEst = redoPopEstimation(mod1, cov = HC))
# estimating equations
mod1_sims <- sandwich::estfun(mod1)
head(mod1_sims)
# bread method
all(vcov(mod1, "Fisher") * nrow(df2) == sandwich::bread(mod1, type = "Fisher"))

singleRcapture documentation built on April 4, 2025, 1:43 a.m.