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inst/tinytest/test_pml_generics.R
In phangorn: Phylogenetic Reconstruction and Analysis
data(woodmouse)
fit <- pml_bb(woodmouse, "HKY+I", rearrangement = "NNI",
control=pml.control(trace=0))
expect_true(AICc(fit) > AIC(fit))
expect_true(BIC(fit) > AIC(fit))
c_mat <- vcov(fit)
expect_true( isSymmetric(c_mat, tol=1e-12) )
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phangorn documentation built on Sept. 17, 2024, 5:08 p.m.
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data(woodmouse)
fit <- pml_bb(woodmouse, "HKY+I", rearrangement = "NNI",
control=pml.control(trace=0))
expect_true(AICc(fit) > AIC(fit))
expect_true(BIC(fit) > AIC(fit))
c_mat <- vcov(fit)
expect_true( isSymmetric(c_mat, tol=1e-12) )
Try the phangorn package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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