cladePar: Utility function to plot.phylo

In phangorn: Phylogenetic Reconstruction and Analysis

Utility function to plot.phylo

Description

cladePar can help you coloring (choosing edge width/type) of clades.

Usage

cladePar(tree, node, edge.color = "red", tip.color = edge.color,
  edge.width = 1, edge.lty = "solid", x = NULL, plot = FALSE, ...)

Arguments

tree	an object of class phylo.
node	the node which is the common ancestor of the clade.
edge.color	see plot.phylo.
tip.color	see plot.phylo.
edge.width	see plot.phylo.
edge.lty	see plot.phylo.
x	the result of a previous call to cladeInfo.
plot	logical, if TRUE the tree is plotted.
...	Further arguments passed to or from other methods.

Value

A list containing the information about the edges and tips.

Author(s)

Klaus Schliep [e-mail]

See Also

plot.phylo

Examples

tree <- rtree(10)
plot(tree)
nodelabels()
x <- cladePar(tree, 12)
cladePar(tree, 18, "blue", "blue", x=x, plot=TRUE)

phangorn documentation built on Sept. 17, 2024, 5:08 p.m.