Files in mulea
Enrichment Analysis Using Multiple Ontologies and False Discovery Rate
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/Utils.R
R/ORA.R
R/SetBasedEnrichmentTest.R
R/SubramanianTest.R
R/GenericFunctions.R
R/set-based-enrichment-test.r
R/HypergeometricTest.R
R/Zzz.R
R/Methods.R
R/Plotting.R
R/RankedBasedTest.R
src/RcppExports.cpp
src/set-based-enrichment-test.cpp
inst/CITATION
inst/doc/mulea.Rmd
inst/doc/mulea.html
inst/doc/mulea.R
inst/extdata/background_set.txt
inst/extdata/target_set.txt
inst/extdata/model.gmt
inst/extdata/ordered_set.tsv
inst/extdata/Transcription_factor_RegulonDB_Escherichia_coli_GeneSymbol.gmt
inst/extdata/GSE55662.table_wt_non_vs_cipro.tsv
build/vignette.rds
tests/testthat.R
tests/testthat/testHelpersAndUtilsTest.R
tests/testthat/testSubramanianTest.R
tests/testthat/testHypergeometricTest.R
tests/testthat/testPermTest.R
vignettes/mulea.Rmd
vignettes/Regulon.png
vignettes/geo_main.gif
vignettes/Venn.png
man/ora-class.Rd
man/plot_barplot.Rd
man/reshape_results.Rd
man/plot_heatmap.Rd
man/SetBasedEnrichmentTest-class.Rd
man/MuleaHypergeometricTest-class.Rd
man/plot_lollipop.Rd
man/list_to_gmt.Rd
man/run_test.Rd
man/filter_ontology.Rd
man/read_gmt.Rd
man/gsea-class.Rd
man/plot_graph.Rd
man/SubramanianTest-class.Rd
man/write_gmt.Rd
man/figures/MulEA_logo.png
