strip_sequence_PEAKS: Strip sequence from PEAKS outputs

In PepMapViz: A Versatile Toolkit for Peptide Mapping, Visualization, and Comparative Exploration

Strip sequence from PEAKS outputs

Description

This function takes PEAKS output containing a column with peptide sequences to be stripped and converts it into a new dataframe with the stripped sequence

Usage

strip_sequence_PEAKS(data, column, convert_column)

Arguments

data	A dataframe with a column containing peptide sequences to be stripped
column	The name of the column containing the peptide sequences to be stripped.
convert_column	The name of the column where the stripped sequences will be stored.

Value

A dataframe with a column containing stripped sequence

Examples

library(data.table)
data <- data.table(
  Peptide = c(
    "AAN(+0.98)Q(-0.98)RGSLYQCDYSTGSC(+57.02)EPIR",
    "K.AAQQTGKLVHANFGT.K",
    "K.(+0.98)AATVTGKLVHANFGT.K"
  ),
  Condition = c("A", "B", "B")
)
column <- "Peptide"
convert_column <- "Sequence"
converted_data <- strip_sequence_PEAKS(data, column, convert_column)

PepMapViz documentation built on April 3, 2025, 6:29 p.m.