Man pages for PepMapViz
A Versatile Toolkit for Peptide Mapping, Visualization, and Comparative Exploration
| calculate_all_Area | Calculate Area/Intensity for the whole input sequence... |
| calculate_all_PSM | Calculate Spectra Count (PSM) for the whole input sequence... |
| calculate_Area | Calculate Area/Intensity for one row of the input sequence... |
| calculate_PSM | Calculate Spectra Count (PSM) for one row of the input... |
| combine_files_from_folder | Combine CSV and TXT Files from a Folder |
| convert_to_regex_pattern | Convert Peptide Sequence to Regex Pattern |
| create_peptide_plot | Create a peptide Plot |
| match_and_calculate_positions | Match peptide sequence with provided sequence and calculate... |
| obtain_mod | Obtain post translational modification(PTM) information from... |
| obtain_mod_Comet | Obtain modification information from Peptide data generated... |
| obtain_mod_DIANN | Obtain modification information from Peptide data generated... |
| obtain_mod_Maxquant | Obtain modification information from Peptide data generated... |
| obtain_mod_MSFragger | Obtain modification information from Peptide data generated... |
| obtain_mod_PEAKS | Obtain modification information from Peptide data generated... |
| obtain_mod_Skyline | Obtain modification information from Peptide data generated... |
| obtain_mod_Spectronaut | Obtain modification information from Peptide data generated... |
| peptide_quantification | Peptide Quantification |
| strip_sequence | Strip peptide sequences based on the specified data type |
| strip_sequence_Comet | Strip sequence from Comet outputs |
| strip_sequence_DIANN | Strip sequence from DIANN outputs |
| strip_sequence_Maxquant | Strip sequence from Maxquant outputs |
| strip_sequence_MSFragger | Strip sequence from MSFragger outputs |
| strip_sequence_PEAKS | Strip sequence from PEAKS outputs |
| strip_sequence_Skyline | Strip sequence from Skyline outputs |
| strip_sequence_Spectronaut | Strip sequence from Spectronaut outputs |
