PepMapViz: A Versatile Toolkit for Peptide Mapping, Visualization, and Comparative Exploration

A versatile R visualization package that empowers researchers with comprehensive visualization tools for seamlessly mapping peptides to protein sequences, identifying distinct domains and regions of interest, accentuating mutations, and highlighting post-translational modifications, all while enabling comparisons across diverse experimental conditions. Potential applications of 'PepMapViz' include the visualization of cross-software mass spectrometry results at the peptide level for specific protein and domain details in a linearized format and post-translational modification coverage across different experimental conditions; unraveling insights into disease mechanisms. It also enables visualization of major histocompatibility complex-presented peptides in different antibody regions predicting immunogenicity in antibody drug development.

Package details

AuthorZhenru Zhou [aut, cre], Qui Phung [ctb], Corey Bakalarski [aut], Genentech, Inc. [cph]
Bioconductor views Immunogenicity MassSpectrometry Peptidomics Proteomics Software Visualization
MaintainerZhenru Zhou <zhou.zhenru@gene.com>
LicenseMIT + file LICENSE
Version1.0.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("PepMapViz")

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PepMapViz documentation built on April 3, 2025, 6:29 p.m.