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MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis
Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' R packages. It helps to build reproducible and robust bioinformatics pipelines in R. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>.
Getting started
Browse package contents
Package details |
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| Author | Adrien Taudière [aut, cre, cph] (<https://orcid.org/0000-0003-1088-1182>) |
| Bioconductor views | Classification Clustering Metagenomics Microbiome Sequencing Visualization |
| Maintainer | Adrien Taudière <adrien.taudiere@zaclys.net> |
| License | AGPL-3 |
| Version | 0.10.1 |
| URL | https://github.com/adrientaudiere/MiscMetabar https://adrientaudiere.github.io/MiscMetabar/ |
| Package repository | View on CRAN |
| Installation |
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