jg.correctDBASizeFactors: jg.correctDBASizeFactors
In Brundle: Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data
Description
Usage
Arguments
Examples
Description
Correct the size factors in a DiffBind object using our DESeq2 pipeline for
normalisation.
Usage
1
jg.correctDBASizeFactors(dba, jg.controlSizeFactors)
Arguments
dba
Diffbind object to have size factors corrected
jg.controlSizeFactors
Vector of replacement size factors
Examples
1
2
3
4
data(jg.controlPeaksetDeSeq,package="Brundle")
data(dbaExperiment,package="Brundle")
jg.controlSizeFactors = estimateSizeFactorsForMatrix(jg.controlPeaksetDeSeq)
jg.correctDBASizeFactors(dbaExperiment,jg.controlSizeFactors)
Brundle documentation built on May 2, 2019, 10:14 a.m.
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Description Usage Arguments Examples
Description
Correct the size factors in a DiffBind object using our DESeq2 pipeline for normalisation.
Usage
1 | jg.correctDBASizeFactors(dba, jg.controlSizeFactors)
|
Arguments
dba |
Diffbind object to have size factors corrected |
jg.controlSizeFactors |
Vector of replacement size factors |
Examples
1 2 3 4 | data(jg.controlPeaksetDeSeq,package="Brundle")
data(dbaExperiment,package="Brundle")
jg.controlSizeFactors = estimateSizeFactorsForMatrix(jg.controlPeaksetDeSeq)
jg.correctDBASizeFactors(dbaExperiment,jg.controlSizeFactors)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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