deg_volcano: draw a volcano for DEG result
In AnnoProbe: Annotate the Gene Symbols for Probes in Expression Array
deg_volcano R Documentation
draw a volcano for DEG result
Description
deg_volcano will draw a volcano for you.
Usage
deg_volcano(need_deg, style = 1, p_thred = 0.05, logFC_thred = 1)
Arguments
need_deg
should be 3 columns : gene, logFC, p.value(or p.adjust
style
you can try 1 or 2, default: 1
p_thred
default:0.05
logFC_thred
default:1
Value
a ggplot2 style figure.
Examples
deg=GSE27533$DEG
need_deg=data.frame(symbols=rownames(deg), logFC=deg$logFC, p=deg$P.Value)
deg_volcano(need_deg,2)
deg_volcano(need_deg,1)
AnnoProbe documentation built on Nov. 14, 2022, 9:05 a.m.
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| deg_volcano | R Documentation |
draw a volcano for DEG result
Description
deg_volcano will draw a volcano for you.
Usage
deg_volcano(need_deg, style = 1, p_thred = 0.05, logFC_thred = 1)
Arguments
need_deg |
should be 3 columns : gene, logFC, p.value(or p.adjust |
style |
you can try 1 or 2, default: 1 |
p_thred |
default:0.05 |
logFC_thred |
default:1 |
Value
a ggplot2 style figure.
Examples
deg=GSE27533$DEG need_deg=data.frame(symbols=rownames(deg), logFC=deg$logFC, p=deg$P.Value) deg_volcano(need_deg,2) deg_volcano(need_deg,1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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