exportSequences: Export cluster sequences for motif search analysis
In wavClusteR: Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Export cluster sequences for motif search analysis (FASTA format), e.g.
using MEME-ChIP
Usage
1
exportSequences(clusters, filename = 'wavClusters.fasta')
Arguments
clusters
GRanges object containing individual clusters as identified
by the filterClusters function
filename
A character defining the BED file name. Default to
"wavClusters.fasta"
Value
A FASTA file containing the cluster sequences
Author(s)
Federico Comoglio
See Also
wavClusteR documentation built on Nov. 8, 2020, 6:54 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
Export cluster sequences for motif search analysis (FASTA format), e.g. using MEME-ChIP
Usage
1 | exportSequences(clusters, filename = 'wavClusters.fasta')
|
Arguments
clusters |
GRanges object containing individual clusters as identified by the filterClusters function |
filename |
A character defining the BED file name. Default to "wavClusters.fasta" |
Value
A FASTA file containing the cluster sequences
Author(s)
Federico Comoglio
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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